Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 14 curated entries in PaperBLAST's database that match '4.2.3.5' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_19540: chorismate synthase
is similar to:
PaperBLAST

AROC_ECOLI / P12008: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 from Escherichia coli
AroC / b2329: chorismate synthase (EC 4.2.3.5) from Escherichia coli
aroC / P12008: chorismate synthase (EC 4.2.3.5) from Escherichia coli

72% id,
99% cov

AROC_HELPY / P56122: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Helicobacter pylori

44% id,
95% cov

AROC_YEAST / P28777: Chorismate synthase ARO2; 5-enolpyruvylshikimate-3-phosphate phospholyase; Aromatic amino acid requiring protein 2; EC 1.5.1.38; EC 4.2.3.5 from Saccharomyces cerevisiae

42% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory