Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 23 curated entries in PaperBLAST's database that match '4.3.1.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_09605: histidine ammonia-lyase is similar to:	PaperBLAST
AO356_09605: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	100% id, 100% cov
Pf1N1B4_1582: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	92% id, 100% cov
HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida	41% id, 98% cov
BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans	42% id, 95% cov
BWI76_RS08740: Histidine ammonia-lyase (EC 4.3.1.3) from Klebsiella michiganensis	41% id, 95% cov
Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis	41% id, 94% cov
Ac3H11_2558: Histidine ammonia-lyase (EC 4.3.1.3) from Acidovorax sp.	41% id, 95% cov
PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	40% id, 95% cov
Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	40% id, 95% cov
Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis	39% id, 97% cov
SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti	38% id, 98% cov
PGA1_c36340: Histidine ammonia-lyase (EC 4.3.1.3) from Phaeobacter inhibens	39% id, 93% cov
HUTH_DICDI / Q54JI7: Probable histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Dictyostelium discoideum	35% id, 100% cov
CA265_RS22270: Histidine ammonia-lyase (EC 4.3.1.3) from Pedobacter sp.	35% id, 92% cov
Q0VGW8: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus laevis	37% id, 77% cov
HUTH_HUMAN / P42357: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Homo sapiens HAL / P42357: histidase subunit (EC 4.3.1.3) from Homo sapiens P42357: histidine ammonia-lyase (EC 4.3.1.3) from Homo sapiens	37% id, 78% cov
F6RBJ7: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	37% id, 77% cov
HUTH_RAT / P21213: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Rattus norvegicus	36% id, 78% cov
Q6AZU6: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	37% id, 76% cov
HUTH1_CAEEL / Q20502: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Caenorhabditis elegans	37% id, 75% cov
More...

AO356_09600: histidine ammonia-lyase is similar to:	PaperBLAST
Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	99% id, 100% cov
PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	94% id, 100% cov
HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida	85% id, 100% cov
BWI76_RS08740: Histidine ammonia-lyase (EC 4.3.1.3) from Klebsiella michiganensis	79% id, 100% cov
BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans	63% id, 98% cov
Ac3H11_2558: Histidine ammonia-lyase (EC 4.3.1.3) from Acidovorax sp.	57% id, 99% cov
Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis	56% id, 98% cov
SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti	54% id, 100% cov
PGA1_c36340: Histidine ammonia-lyase (EC 4.3.1.3) from Phaeobacter inhibens	51% id, 97% cov
Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis	43% id, 98% cov
CA265_RS22270: Histidine ammonia-lyase (EC 4.3.1.3) from Pedobacter sp.	42% id, 91% cov
AO356_09605: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	40% id, 94% cov
HUTH_DICDI / Q54JI7: Probable histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Dictyostelium discoideum	39% id, 97% cov
Pf1N1B4_1582: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	39% id, 96% cov
HUTH_HUMAN / P42357: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Homo sapiens HAL / P42357: histidase subunit (EC 4.3.1.3) from Homo sapiens P42357: histidine ammonia-lyase (EC 4.3.1.3) from Homo sapiens	43% id, 77% cov
HUTH_RAT / P21213: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Rattus norvegicus	43% id, 76% cov
Q6AZU6: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	45% id, 73% cov
F6RBJ7: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	44% id, 75% cov
Q0VGW8: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus laevis	43% id, 75% cov
HUTH1_CAEEL / Q20502: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Caenorhabditis elegans	42% id, 72% cov
More...

AO356_09175: histidine ammonia-lyase is similar to:	PaperBLAST
BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans	36% id, 91% cov
Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis	34% id, 95% cov
SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti	34% id, 95% cov
Ac3H11_2558: Histidine ammonia-lyase (EC 4.3.1.3) from Acidovorax sp.	34% id, 93% cov
HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida	32% id, 96% cov
HUTH_DICDI / Q54JI7: Probable histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Dictyostelium discoideum	32% id, 96% cov
Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis	32% id, 98% cov
CA265_RS22270: Histidine ammonia-lyase (EC 4.3.1.3) from Pedobacter sp.	31% id, 96% cov
PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	31% id, 95% cov
Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	31% id, 95% cov
BWI76_RS08740: Histidine ammonia-lyase (EC 4.3.1.3) from Klebsiella michiganensis	31% id, 94% cov
PGA1_c36340: Histidine ammonia-lyase (EC 4.3.1.3) from Phaeobacter inhibens	30% id, 94% cov
HUTH_HUMAN / P42357: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Homo sapiens HAL / P42357: histidase subunit (EC 4.3.1.3) from Homo sapiens P42357: histidine ammonia-lyase (EC 4.3.1.3) from Homo sapiens	34% id, 76% cov
HUTH1_CAEEL / Q20502: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Caenorhabditis elegans	36% id, 73% cov
Q0VGW8: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus laevis	34% id, 76% cov
HUTH_RAT / P21213: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Rattus norvegicus	34% id, 76% cov
F6RBJ7: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	34% id, 74% cov
Q6AZU6: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	33% id, 76% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory