Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 12 curated entries in PaperBLAST's database that match '5.1.99.1' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_28925: methylmalonyl-CoA epimerase
is similar to:
PaperBLAST

Q8RCQ6: methylmalonyl-CoA epimerase (EC 5.1.99.1) from Caldanaerobacter subterraneus

29% id,
86% cov

AO356_15580: 4-hydroxyphenylpyruvate dioxygenase
is similar to:
PaperBLAST

EPI_CERS4 / Q3IZP4: Ethylmalonyl-CoA/methylmalonyl-CoA epimerase; EC 5.1.99.-; EC 5.1.99.1 from Cereibacter sphaeroides

28% id,
75% cov

mcee / A9WGS0: methylmalonyl-CoA epimerase (EC 5.1.99.1) from Chloroflexus aurantiacus

29% id,
71% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory