Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 117 curated entries in PaperBLAST's database that match '6.3.1.2' as complete word(s).

These curated entries have 85 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_09705: glutamine synthetase
is similar to:
PaperBLAST

GLN1B_PSETA / Q3V5W6: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Pseudomonas taetrolens

95% id,
100% cov

glnA: glutamate--ammonia ligase; EC 6.3.1.2 from Escherichia coli
glnA / P0A9C5: glutamine synthetase (EC 6.3.1.2) from Escherichia coli

70% id,
99% cov

GLN1B_SALTY / P0A1P6: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Salmonella typhimurium
glnA: glutamate--ammonia ligase; EC 6.3.1.2 from Salmonella enterica
P0A1P6: glutamine synthetase (EC 6.3.1.2) from Salmonella enterica

69% id,
99% cov

More...

AO356_30085: glutamine synthetase
is similar to:
PaperBLAST

GLNA3_HALMT / I3R176: Glutamine synthetase 3; GS3; Glutamate--ammonia ligase; EC 6.3.1.2 from Haloferax mediterranei
B8ZJH0: glutamine synthetase (EC 6.3.1.2) from Haloferax mediterranei

38% id,
98% cov

GLNA3_RHIME / O87393: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase III; GSIII; EC 6.3.1.2 from Rhizobium meliloti

37% id,
97% cov

GLNA_THET8 / Q5SIP0: Glutamine synthetase; GS; Glutamate--ammonia ligase; EC 6.3.1.2 from Thermus thermophilus

36% id,
98% cov

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AO356_13145: glutamine synthetase
is similar to:
PaperBLAST

P36687: glutamine synthetase (EC 6.3.1.2) from Pyrococcus woesei

33% id,
97% cov

GLNA_THEKO / O08467: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Thermococcus kodakarensis
O08467: glutamine synthetase (EC 6.3.1.2) from Pyrococcus sp.

33% id,
88% cov

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

31% id,
92% cov

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AO356_01510: glutamine synthetase
is similar to:
PaperBLAST

O07752: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

33% id,
97% cov

F2RM17: glutamine synthetase (EC 6.3.1.2) from Haloferax mediterranei

34% id,
80% cov

GLNA_METJA / Q60182: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Methanocaldococcus jannaschii
Q60182: glutamine synthetase (EC 6.3.1.2) from Methanocaldococcus jannaschii

28% id,
79% cov

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AO356_18875: glutamate--ammonia ligase
is similar to:
PaperBLAST

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

31% id,
98% cov

GLNA_THEKO / O08467: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Thermococcus kodakarensis
O08467: glutamine synthetase (EC 6.3.1.2) from Pyrococcus sp.

32% id,
93% cov

C4L2T5: glutamine synthetase (EC 6.3.1.2) from Exiguobacterium sp.

31% id,
89% cov

More...

AO356_04435: glutamine synthetase
is similar to:
PaperBLAST

F2RM17: glutamine synthetase (EC 6.3.1.2) from Haloferax mediterranei

32% id,
98% cov

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

31% id,
94% cov

P64246: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

29% id,
97% cov

More...

AO356_13135: gamma-glutamylputrescine synthetase
is similar to:
PaperBLAST

P36205: glutamine synthetase (EC 6.3.1.2) from Thermotoga maritima

31% id,
97% cov

GLNA_SULAC / Q9HH09: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Sulfolobus acidocaldarius
Q9HH09: glutamine synthetase (EC 6.3.1.2) from Sulfolobus acidocaldarius

30% id,
98% cov

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

31% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory