Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 1 curated entries in PaperBLAST's database that match 'LysW%lysine%hydrolase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_13080: acetylornithine deacetylase
is similar to:
PaperBLAST

LYSK_THET2 / Q8VUS5: [LysW]-lysine hydrolase; EC 3.5.1.130 from Thermus thermophilus

29% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory