Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 22 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_26160: MFS transporter
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

42% id,
100% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

41% id,
94% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

39% id,
94% cov

More...

AO356_24590: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

41% id,
97% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

41% id,
91% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

38% id,
93% cov

More...

AO356_01235: MFS transporter
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

40% id,
95% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

38% id,
93% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

37% id,
94% cov

More...

AO356_25010: MFS transporter
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

41% id,
95% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

38% id,
96% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

36% id,
95% cov

More...

AO356_27320: MFS transporter permease
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

40% id,
96% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

37% id,
95% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

37% id,
94% cov

More...

AO356_25570: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

37% id,
96% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

35% id,
97% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

34% id,
96% cov

More...

AO356_28745: MFS transporter
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

36% id,
95% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

35% id,
96% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

33% id,
100% cov

More...

AO356_22860: MFS transporter permease
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

35% id,
96% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

36% id,
92% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

35% id,
92% cov

More...

AO356_20295: glucarate transporter
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

27% id,
96% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

26% id,
89% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

25% id,
92% cov

More...

AO356_24680: MFS transporter
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

29% id,
92% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

28% id,
93% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

27% id,
93% cov

More...

AO356_20660: glucarate transporter
is similar to:
PaperBLAST

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

27% id,
94% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

27% id,
90% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

26% id,
90% cov

More...

AO356_07175: glucarate transporter
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

26% id,
95% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

25% id,
93% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

24% id,
91% cov

AO356_28540: hexuronate transporter
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

25% id,
92% cov

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

22% id,
94% cov

AO356_15575: hypothetical protein
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

27% id,
83% cov

AO356_05305: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

24% id,
86% cov

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

23% id,
86% cov

AO356_14055: hexuronate transporter
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

21% id,
93% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

25% id,
42% cov

AO356_29245: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

22% id,
87% cov

AO356_30280: hypothetical protein
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

27% id,
44% cov

AO356_25660: MFS transporter
is similar to:
PaperBLAST

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

27% id,
43% cov

AO356_29615: transporter
is similar to:
PaperBLAST

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

24% id,
47% cov

AO356_04340: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

25% id,
28% cov

AO356_23960: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

24% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 20 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory