Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2C3 (pseudo5_N2C3_1)

Found 25 curated entries in PaperBLAST's database that match 'sucrose hydrolase' as complete word(s).

These curated entries have 25 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2C3, or try another query

AO356_28590: glycosyl hydrolase family 32
is similar to:
PaperBLAST

AAP79503.1: sucrose hydrolase (CscA) (EC 3.2.1.26)

46% id,
97% cov

scrB / Q9ZHJ7: sucrose hydrolase from Clostridium beijerinckii

31% id,
99% cov

INV6_ORYSJ / Q56UD0: Beta-fructofuranosidase, insoluble isoenzyme 6; Cell wall beta-fructosidase 6; Invertase 6; OsCIN6; Sucrose hydrolase 6; EC 3.2.1.26 from Oryza sativa

29% id,
91% cov

More...

AO356_01250: alpha-amylase
is similar to:
PaperBLAST

AAM42629.1: sucrose hydrolase (SuxB;XCC3359) (EC 3.2.1.-)

31% id,
51% cov

3czkA / Q6UVM5: Crystal structure analysis of sucrose hydrolase(suh) e322q-sucrose complex

30% id,
50% cov

AAM38333.1: sucrose hydrolase (XAC3490) (EC 3.2.1.-)

31% id,
48% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory