Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 5 curated entries in PaperBLAST's database that match '1.1.1.175' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 27 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_1839: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-)
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

38% id,
94% cov

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

34% id,
96% cov

Pf6N2E2_1794: FIG00553873: hypothetical protein
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

36% id,
91% cov

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

35% id,
92% cov

Pf6N2E2_5209: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

35% id,
94% cov

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

31% id,
96% cov

Pf6N2E2_6050: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

33% id,
97% cov

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

34% id,
94% cov

Pf6N2E2_1663: 2-keto-3-deoxy-L-fuconate dehydrogenase
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

34% id,
94% cov

Pf6N2E2_5952: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

34% id,
94% cov

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

32% id,
96% cov

Pf6N2E2_686: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

33% id,
96% cov

Pf6N2E2_1004: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

33% id,
94% cov

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

32% id,
96% cov

Pf6N2E2_3704: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

33% id,
95% cov

Pf6N2E2_1747: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

34% id,
91% cov

Pf6N2E2_1446: Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10)
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

33% id,
93% cov

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

32% id,
96% cov

Pf6N2E2_1375: Multiple polyol-specific dehydrogenase (EC 1.1.1.-)
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

33% id,
94% cov

Pf6N2E2_1212: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

33% id,
93% cov

Pf6N2E2_394: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

32% id,
96% cov

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

31% id,
94% cov

Pf6N2E2_5889: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

32% id,
94% cov

Pf6N2E2_3703: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

31% id,
96% cov

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

31% id,
94% cov

Pf6N2E2_3493: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

31% id,
93% cov

Pf6N2E2_1172: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

30% id,
94% cov

Pf6N2E2_1322: MoaE protein
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

29% id,
93% cov

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

28% id,
96% cov

Pf6N2E2_1925: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

35% id,
76% cov

Pf6N2E2_6019: putative oxidoreductase
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

30% id,
86% cov

Pf6N2E2_3916: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

28% id,
93% cov

Pf6N2E2_3410: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

28% id,
89% cov

Pf6N2E2_5375: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

31% id,
72% cov

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

31% id,
70% cov

Pf6N2E2_6080: Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

24% id,
92% cov

Pf6N2E2_1654: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

31% id,
70% cov

Pf6N2E2_2548: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

27% id,
71% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 26 reading frames. Except for 5 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2060617-2061426 (frame +1) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis
Also see hits to annotated proteins above

34% id,
98% cov

1969856-1970995 (frame -3) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis
Also see hits to annotated proteins above

34% id,
97% cov

6708051-6708899 (frame +3) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis
Also see hits to annotated proteins above

31% id,
99% cov

4551177-4551971 (frame +3) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis
Also see hits to annotated proteins above

27% id,
97% cov

3008503-3009441 (frame -1) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis
Also see hits to annotated proteins above

27% id,
78% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory