Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 31 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_5719: D-lactate dehydrogenase (EC 1.1.1.28)
is similar to:		 PaperBLAST

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

 75% id,
99% cov

Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis

 56% id,
98% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

 51% id,
100% cov

More...

Pf6N2E2_6020: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:		 PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

 39% id,
96% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

 29% id,
83% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

 27% id,
81% cov

More...

Pf6N2E2_562: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:		 PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

 41% id,
87% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

 29% id,
92% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

 29% id,
89% cov

More...

Pf6N2E2_627: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43)
is similar to:		 PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

 42% id,
84% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

 36% id,
83% cov

Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis

 29% id,
92% cov

More...

Pf6N2E2_5310: Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-)
is similar to:		 PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

 36% id,
98% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

 35% id,
77% cov

O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum

 26% id,
98% cov

More...

Pf6N2E2_1079: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:		 PaperBLAST

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

 36% id,
88% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

 33% id,
94% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

 29% id,
89% cov

More...

Pf6N2E2_1497: D-2-hydroxyglutarate dehydrogenase
is similar to:		 PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 33% id,
92% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

 30% id,
95% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

 28% id,
77% cov

Pf6N2E2_3246: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:		 PaperBLAST

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

 33% id,
91% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

 34% id,
80% cov

vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium

 33% id,
82% cov

More...

Pf6N2E2_3933: D-2-hydroxyglutarate dehydrogenase
is similar to:		 PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 30% id,
99% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

 29% id,
94% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

 28% id,
75% cov

Pf6N2E2_3932: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:		 PaperBLAST

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

 31% id,
93% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

 36% id,
75% cov

E0NDE9: D-lactate dehydrogenase (EC 1.1.1.28) from Pediococcus acidilactici

 27% id,
95% cov

More...

Pf6N2E2_137: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
is similar to:		 PaperBLAST

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

 28% id,
94% cov

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 27% id,
91% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

 28% id,
78% cov

Pf6N2E2_2297: Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)
is similar to:		 PaperBLAST

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

 27% id,
95% cov

ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactiplantibacillus plantarum
C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactiplantibacillus plantarum

 25% id,
89% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

 27% id,
82% cov

More...

Pf6N2E2_372: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:		 PaperBLAST

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

 31% id,
76% cov

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

 25% id,
87% cov

Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum

 24% id,
82% cov

More...

Pf6N2E2_1021: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:		 PaperBLAST

E0NDE9: D-lactate dehydrogenase (EC 1.1.1.28) from Pediococcus acidilactici

 24% id,
89% cov

LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici
ldhD / GI|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici

 24% id,
89% cov

O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum

 30% id,
69% cov

More...

Pf6N2E2_3385: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
is similar to:		 PaperBLAST

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

 27% id,
45% cov

Pf6N2E2_136: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
is similar to:		 PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 32% id,
38% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

 30% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 16 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory