Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 9 curated entries in PaperBLAST's database that match '1.1.1.31' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_3451: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
is similar to:
PaperBLAST

AO353_05985: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

92% id,
100% cov

PfGW456L13_5145: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

90% id,
100% cov

mmsB / Q76KL5: 3-hydroxyisobutyrate dehydrogenase subunit (EC 1.1.1.31) from Pseudomonas putida
Q76KL5: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas putida

87% id,
99% cov

More...

Pf6N2E2_5837: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
is similar to:
PaperBLAST

Psest_2438: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas stutzeri

39% id,
97% cov

PfGW456L13_5145: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

36% id,
98% cov

AO353_05985: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

36% id,
98% cov

More...

Pf6N2E2_1929: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
is similar to:
PaperBLAST

AO353_05985: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

31% id,
93% cov

mmsB / Q76KL5: 3-hydroxyisobutyrate dehydrogenase subunit (EC 1.1.1.31) from Pseudomonas putida
Q76KL5: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas putida

30% id,
92% cov

PfGW456L13_5145: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

30% id,
92% cov

More...

Pf6N2E2_757: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
is similar to:
PaperBLAST

MMSB_PSEAE / P28811: 3-hydroxyisobutyrate dehydrogenase; HIBADH; EC 1.1.1.31 from Pseudomonas aeruginosa

27% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory