Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 33 curated entries in PaperBLAST's database that match '1.1.1.95'.

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 15 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_3932: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

65% id,
100% cov

U3RH61: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Acanthamoeba castellanii

50% id,
92% cov

SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae

50% id,
88% cov

More...

Pf6N2E2_2725: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

34% id,
99% cov

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

27% id,
87% cov

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

29% id,
50% cov

More...

Pf6N2E2_5310: Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-)
is similar to:
PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

34% id,
96% cov

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

29% id,
83% cov

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

33% id,
63% cov

More...

Pf6N2E2_1021: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

33% id,
96% cov

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

25% id,
65% cov

SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae

29% id,
49% cov

More...

Pf6N2E2_562: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

33% id,
93% cov

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

32% id,
66% cov

SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae

29% id,
69% cov

More...

Pf6N2E2_372: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

31% id,
97% cov

U3RH61: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Acanthamoeba castellanii

25% id,
55% cov

P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis

25% id,
54% cov

More...

Pf6N2E2_627: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43)
is similar to:
PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

32% id,
95% cov

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

33% id,
83% cov

P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis

38% id,
59% cov

More...

Pf6N2E2_6020: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

31% id,
94% cov

Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor

32% id,
60% cov

SER33_YEAST / P40510: D-3-phosphoglycerate dehydrogenase 2; 3-PGDH 2; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae

27% id,
68% cov

More...

Pf6N2E2_5719: D-lactate dehydrogenase (EC 1.1.1.28)
is similar to:
PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

33% id,
80% cov

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

25% id,
89% cov

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

27% id,
79% cov

More...

Pf6N2E2_2297: Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)
is similar to:
PaperBLAST

EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica
Q76KF5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Entamoeba histolytica

29% id,
83% cov

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

28% id,
62% cov

SERA3_ARATH / Q9LT69: D-3-phosphoglycerate dehydrogenase 3, chloroplastic; EC 1.1.1.95 from Arabidopsis thaliana
Q9LT69: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana

27% id,
64% cov

More...

Pf6N2E2_1079: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

26% id,
94% cov

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

27% id,
85% cov

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

33% id,
63% cov

More...

Pf6N2E2_3246: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

27% id,
82% cov

SER33_YEAST / P40510: D-3-phosphoglycerate dehydrogenase 2; 3-PGDH 2; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae

31% id,
69% cov

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

33% id,
63% cov

More...

Pf6N2E2_137: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
is similar to:
PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

30% id,
16% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

32% id,
11% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

35% id,
7% cov

More...

Pf6N2E2_1497: D-2-hydroxyglutarate dehydrogenase
is similar to:
PaperBLAST

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

29% id,
13% cov

Pf6N2E2_3933: D-2-hydroxyglutarate dehydrogenase
is similar to:
PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

36% id,
6% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3755048-3756022 (frame +2) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

30% id,
74% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory