Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 42 curated entries in PaperBLAST's database that match '1.1.99.2'.

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 22 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_261: Aminobutyraldehyde dehydrogenase (EC 1.2.1.19)
is similar to:
PaperBLAST

L2HDH_ACHAE / A0A0M7LBC1: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Achromobacter aegrifaciens

64% id,
100% cov

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

58% id,
95% cov

L2HDH_ARATH / Q9LES4: L-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.2 from Arabidopsis thaliana

46% id,
83% cov

More...

Pf6N2E2_1939: Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2)
is similar to:
PaperBLAST

M9MJR9: glycerol dehydrogenase (acceptor) (EC 1.1.99.22) from Gluconobacter thailandicus

41% id,
94% cov

sldA / Q8KIL1: D-sorbitol dehydrogenase large subunit (EC 1.1.99.21) from Gluconobacter thailandicus

41% id,
94% cov

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans

41% id,
90% cov

More...

Pf6N2E2_4677: Choline dehydrogenase (EC 1.1.99.1)
is similar to:
PaperBLAST

Q2HXX0: alkan-1-ol dehydrogenase (acceptor) (EC 1.1.99.20) from Ensifer sp.

39% id,
99% cov

PDH2_LEUMG / Q3L243: Pyranose dehydrogenase 2; PDH 2; Pyranose:quinone oxidoreductase 2; EC 1.1.99.29 from Leucoagaricus meleagris
Q3L243: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Leucoagaricus meleagris

30% id,
93% cov

PDH1_AGACM / V5NDL4: Pyranose dehydrogenase; PDH; Pyranose:quinone oxidoreductase 1; EC 1.1.99.29 from Agaricus campestris
V5NDL4: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Agaricus campestris

30% id,
92% cov

More...

Pf6N2E2_1907: Choline dehydrogenase (EC 1.1.99.1)
is similar to:
PaperBLAST

Q2HXX0: alkan-1-ol dehydrogenase (acceptor) (EC 1.1.99.20) from Ensifer sp.

36% id,
100% cov

PDH1_AGABI / Q3L1D1: Pyranose dehydrogenase; PDH; Glucose dehydrogenase; GDH; Pyranose 2-dehydrogenase; Pyranose:quinone oxidoreductase; EC 1.1.99.29 from Agaricus bisporus
Q3L1D1: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Agaricus bisporus

29% id,
93% cov

PDH3_LEUMG / Q0R4L2: Pyranose dehydrogenase 3; PDH 3; Pyranose:quinone oxidoreductase 3; EC 1.1.99.29 from Leucoagaricus meleagris
Q0R4L2: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Leucoagaricus meleagris

29% id,
93% cov

More...

Pf6N2E2_5442: Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2)
is similar to:
PaperBLAST

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans

40% id,
88% cov

M9MJR9: glycerol dehydrogenase (acceptor) (EC 1.1.99.22) from Gluconobacter thailandicus

40% id,
89% cov

sldA / Q8KIL1: D-sorbitol dehydrogenase large subunit (EC 1.1.99.21) from Gluconobacter thailandicus

39% id,
89% cov

Pf6N2E2_2094: Choline dehydrogenase (EC 1.1.99.1)
is similar to:
PaperBLAST

Q2HXX0: alkan-1-ol dehydrogenase (acceptor) (EC 1.1.99.20) from Ensifer sp.

36% id,
95% cov

PDH1_AGABI / Q3L1D1: Pyranose dehydrogenase; PDH; Glucose dehydrogenase; GDH; Pyranose 2-dehydrogenase; Pyranose:quinone oxidoreductase; EC 1.1.99.29 from Agaricus bisporus
Q3L1D1: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Agaricus bisporus

30% id,
93% cov

PDH3_LEUMG / Q0R4L2: Pyranose dehydrogenase 3; PDH 3; Pyranose:quinone oxidoreductase 3; EC 1.1.99.29 from Leucoagaricus meleagris
Q0R4L2: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Leucoagaricus meleagris

29% id,
93% cov

More...

Pf6N2E2_389: Choline dehydrogenase (EC 1.1.99.1)
is similar to:
PaperBLAST

Q2HXX0: alkan-1-ol dehydrogenase (acceptor) (EC 1.1.99.20) from Ensifer sp.

34% id,
95% cov

PDH1_AGABI / Q3L1D1: Pyranose dehydrogenase; PDH; Glucose dehydrogenase; GDH; Pyranose 2-dehydrogenase; Pyranose:quinone oxidoreductase; EC 1.1.99.29 from Agaricus bisporus
Q3L1D1: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Agaricus bisporus

31% id,
94% cov

PDH3_LEUMG / Q0R4L2: Pyranose dehydrogenase 3; PDH 3; Pyranose:quinone oxidoreductase 3; EC 1.1.99.29 from Leucoagaricus meleagris
Q0R4L2: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Leucoagaricus meleagris

30% id,
94% cov

More...

Pf6N2E2_4819: Alcohol dehydrogenase (EC 1.1.1.1)
is similar to:
PaperBLAST

HOT_RAT / Q4QQW3: Hydroxyacid-oxoacid transhydrogenase, mitochondrial; HOT; Alcohol dehydrogenase iron-containing protein 1; ADHFe1; EC 1.1.99.24 from Rattus norvegicus

30% id,
90% cov

HOT_MOUSE / Q8R0N6: Hydroxyacid-oxoacid transhydrogenase, mitochondrial; HOT; Alcohol dehydrogenase iron-containing protein 1; ADHFe1; EC 1.1.99.24 from Mus musculus

30% id,
90% cov

HOT_HUMAN / Q8IWW8: Hydroxyacid-oxoacid transhydrogenase, mitochondrial; HOT; Alcohol dehydrogenase iron-containing protein 1; ADHFe1; Fe-containing alcohol dehydrogenase; EC 1.1.99.24 from Homo sapiens
Q8IWW8: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Homo sapiens

30% id,
90% cov

More...

Pf6N2E2_1380: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
is similar to:
PaperBLAST

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica

27% id,
98% cov

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina

26% id,
99% cov

HOT_RAT / Q4QQW3: Hydroxyacid-oxoacid transhydrogenase, mitochondrial; HOT; Alcohol dehydrogenase iron-containing protein 1; ADHFe1; EC 1.1.99.24 from Rattus norvegicus

27% id,
93% cov

More...

Pf6N2E2_2802: Alcohol dehydrogenase (EC 1.1.1.1)
is similar to:
PaperBLAST

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica

28% id,
93% cov

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina

27% id,
93% cov

B7FWP2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Phaeodactylum tricornutum

28% id,
89% cov

More...

Pf6N2E2_543: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
is similar to:
PaperBLAST

gfo / Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis

26% id,
79% cov

Pf6N2E2_1791: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
is similar to:
PaperBLAST

gfo / Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis

25% id,
80% cov

Pf6N2E2_1002: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
is similar to:
PaperBLAST

gfo / Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis

26% id,
78% cov

Pf6N2E2_999: Alcohol dehydrogenase (EC 1.1.1.1)
is similar to:
PaperBLAST

HOT_RAT / Q4QQW3: Hydroxyacid-oxoacid transhydrogenase, mitochondrial; HOT; Alcohol dehydrogenase iron-containing protein 1; ADHFe1; EC 1.1.99.24 from Rattus norvegicus

26% id,
56% cov

HOT_MOUSE / Q8R0N6: Hydroxyacid-oxoacid transhydrogenase, mitochondrial; HOT; Alcohol dehydrogenase iron-containing protein 1; ADHFe1; EC 1.1.99.24 from Mus musculus

25% id,
56% cov

HOT_HUMAN / Q8IWW8: Hydroxyacid-oxoacid transhydrogenase, mitochondrial; HOT; Alcohol dehydrogenase iron-containing protein 1; ADHFe1; Fe-containing alcohol dehydrogenase; EC 1.1.99.24 from Homo sapiens
Q8IWW8: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Homo sapiens

25% id,
51% cov

Pf6N2E2_323: Nucleoside-diphosphate-sugar epimerases
is similar to:
PaperBLAST

gfo / Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis

26% id,
45% cov

Pf6N2E2_518: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
is similar to:
PaperBLAST

gfo / Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis

24% id,
46% cov

Pf6N2E2_1441: Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-)
is similar to:
PaperBLAST

gfo / Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis

22% id,
49% cov

Pf6N2E2_994: NADH-dependent dehydrogenase
is similar to:
PaperBLAST

gfo / Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis

28% id,
31% cov

Pf6N2E2_1382: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)
is similar to:
PaperBLAST

M9MJR9: glycerol dehydrogenase (acceptor) (EC 1.1.99.22) from Gluconobacter thailandicus

24% id,
27% cov

sldA / Q8KIL1: D-sorbitol dehydrogenase large subunit (EC 1.1.99.21) from Gluconobacter thailandicus

24% id,
27% cov

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans

23% id,
27% cov

Pf6N2E2_1389: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)
is similar to:
PaperBLAST

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans

27% id,
21% cov

M9MJR9: glycerol dehydrogenase (acceptor) (EC 1.1.99.22) from Gluconobacter thailandicus

31% id,
13% cov

sldA / Q8KIL1: D-sorbitol dehydrogenase large subunit (EC 1.1.99.21) from Gluconobacter thailandicus

31% id,
13% cov

More...

Pf6N2E2_1856: phytoene dehydrogenase family protein
is similar to:
PaperBLAST

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

44% id,
12% cov

Pf6N2E2_680: D-amino-acid oxidase (EC 1.4.3.3)
is similar to:
PaperBLAST

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

46% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 23 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1618936-1620174 (frame -1) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica
Also see hits to annotated proteins above

27% id,
99% cov

L8HAM2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Acanthamoeba castellanii
Also see hits to annotated proteins above

26% id,
73% cov

3288358-3289581 (frame -1) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

B7FWP2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Phaeodactylum tricornutum
Also see hits to annotated proteins above

27% id,
95% cov

F4PTP3: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Tieghemostelium lacteum
Also see hits to annotated proteins above

25% id,
79% cov

K0T042: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Thalassiosira oceanica
Also see hits to annotated proteins above

27% id,
64% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory