Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 6 curated entries in PaperBLAST's database that match '1.1.99.2' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_261: Aminobutyraldehyde dehydrogenase (EC 1.2.1.19)
is similar to:
PaperBLAST

L2HDH_ACHAE / A0A0M7LBC1: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Achromobacter aegrifaciens

64% id,
100% cov

L2HDH_ACCSB / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter sp.

58% id,
95% cov

L2HDH_ARATH / Q9LES4: L-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.2 from Arabidopsis thaliana

46% id,
83% cov

More...

Pf6N2E2_1856: phytoene dehydrogenase family protein
is similar to:
PaperBLAST

L2HDH_ACCSB / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter sp.

44% id,
12% cov

Pf6N2E2_680: D-amino-acid oxidase (EC 1.4.3.3)
is similar to:
PaperBLAST

L2HDH_ACCSB / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter sp.

46% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory