Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 22 curated entries in PaperBLAST's database that match '1.13.11.1' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_997: Catechol 1,2-dioxygenase 1 (EC 1.13.11.1)
is similar to:
PaperBLAST

HQDA_ASPNC / A2QAP8: Intradiol ring-cleavage dioxygenase hqdA; EC 1.13.11.1; EC 1.13.11.37 from Aspergillus niger

44% id,
72% cov

PS417_23660: Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas simiae

37% id,
78% cov

HQD2_CANAL / P86029: Catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans
orf19.4567: catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans

36% id,
79% cov

More...

Pf6N2E2_2834: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
is similar to:
PaperBLAST

Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus

29% id,
72% cov

Q8GAZ6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.

35% id,
48% cov

catA / A0F0B5: catechol-1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei
A0F0B5: catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei

30% id,
56% cov

More...

Pf6N2E2_2833: Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)
is similar to:
PaperBLAST

Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus

28% id,
63% cov

Q8GAZ6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.

29% id,
49% cov

catA2: catechol 1,2-dioxygenase 2; EC 1.13.11.1 from Acinetobacter lwoffii

30% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1165975-1166970 (frame -1) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

HQDA_ASPNC / A2QAP8: Intradiol ring-cleavage dioxygenase hqdA; EC 1.13.11.1; EC 1.13.11.37 from Aspergillus niger
Also see hits to annotated proteins above

43% id,
88% cov

HQD2_CANAL / P86029: Catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans
orf19.4567: catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans
Also see hits to annotated proteins above

36% id,
92% cov

Q8GAZ6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.
Also see hits to annotated proteins above

33% id,
94% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory