Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 161 curated entries in PaperBLAST's database that match '1.13.11.5'.

These curated entries have 123 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_5290: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
is similar to:
PaperBLAST

Pf6N2E2_5290: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens

100% id,
100% cov

AO353_15550: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens

92% id,
100% cov

PfGW456L13_4962: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens

90% id,
100% cov

More...

Pf6N2E2_5824: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)
is similar to:
PaperBLAST

MTND_KLEOX / Q9ZFE7: Acireductone dioxygenase; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; DHK-MTPene dioxygenase; Acireductone dioxygenase (Fe(2+)-requiring); ARD'; Fe-ARD; Acireductone dioxygenase (Ni(2+)-requiring); ARD; Ni-ARD; EC 1.13.11.54; EC 1.13.11.53 from Klebsiella oxytoca
mtnD / Q9ZFE7: acireductone dioxygenase (EC 1.13.11.54; EC 1.13.11.53) from Klebsiella oxytoca
Q9ZFE7: acireductone dioxygenase (Ni2+-requiring) (EC 1.13.11.53); acireductone dioxygenase [iron(II)-requiring] (EC 1.13.11.54) from Klebsiella oxytoca

46% id,
99% cov

Pf6N2E2_230: lignostilbene-alpha,beta-dioxygenase
is similar to:
PaperBLAST

Q8YXV3: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Nostoc sp.

33% id,
93% cov

NCED4_ORYSJ / Q69NX5: 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic; OsNCED4; EC 1.13.11.51 from Oryza sativa

29% id,
81% cov

A0A220T631: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Citrus reticulata

28% id,
79% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory