Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 163 curated entries in PaperBLAST's database that match '1.13.11.5'.

These curated entries have 126 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_5290: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) is similar to:	PaperBLAST
Pf6N2E2_5290: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens	100% id, 100% cov
AO353_15550: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens	92% id, 100% cov
PfGW456L13_4962: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens	90% id, 100% cov
HGD_PSEPK / Q88E47: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida Q88E47: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas putida	83% id, 99% cov
HGD_PSEPU / Q6EMI9: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida	81% id, 99% cov
RR42_RS31275: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Cupriavidus basilensis	61% id, 98% cov
HGD_RHIME / Q9X4F5: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Rhizobium meliloti	54% id, 95% cov
HMGA_ASPFU / Q4WHT9: Homogentisate 1,2-dioxygenase hmgA; Homogentisate oxygenase hmgA; Homogentisic acid oxidase hmgA; Homogentisicase hmgA; L-tyrosine degradation gene cluster protein hmgA; Pyomelanin biosynthesis cluster protein hmgA; EC 1.13.11.5 from Aspergillus fumigatus	52% id, 97% cov
HGD_MOUSE / O09173: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Mus musculus	51% id, 98% cov
HGD_EMENI / Q00667: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Emericella nidulans GI\|2832726: homogentisate dioxygenase; EC 1.13.11.5; EC 1.13.11.15 from Emericella nidulans	51% id, 97% cov
Q9ZRA2: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Arabidopsis thaliana	53% id, 94% cov
B8YB76: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Bos taurus	50% id, 98% cov
HGD_CAEEL / Q9Y041: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Caenorhabditis elegans	49% id, 99% cov
HGD_HUMAN / Q93099: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Homo sapiens HGD / Q93099: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Homo sapiens	49% id, 98% cov
Q6JDV6: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Exophiala lecanii-corni	48% id, 90% cov
More...

Pf6N2E2_5824: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)
is similar to:

PaperBLAST

MTND_KLEOX / Q9ZFE7: Acireductone dioxygenase; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; DHK-MTPene dioxygenase; Acireductone dioxygenase (Fe(2+)-requiring); ARD'; Fe-ARD; Acireductone dioxygenase (Ni(2+)-requiring); ARD; Ni-ARD; EC 1.13.11.54; EC 1.13.11.53 from Klebsiella oxytoca
mtnD / Q9ZFE7: acireductone dioxygenase (EC 1.13.11.54; EC 1.13.11.53) from Klebsiella oxytoca
Q9ZFE7: acireductone dioxygenase (Ni2+-requiring) (EC 1.13.11.53); acireductone dioxygenase [iron(II)-requiring] (EC 1.13.11.54) from Klebsiella oxytoca

46% id,
99% cov

Pf6N2E2_230: lignostilbene-alpha,beta-dioxygenase is similar to:	PaperBLAST
Q8YXV3: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Nostoc sp.	33% id, 93% cov
NCED4_ORYSJ / Q69NX5: 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic; OsNCED4; EC 1.13.11.51 from Oryza sativa	29% id, 81% cov
A0A220T631: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Citrus reticulata	28% id, 79% cov
NCED1_MAIZE / O24592: 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic; Protein VIVIPAROUS14; VP-14; VP14; EC 1.13.11.51 from Zea mays O24592: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Zea mays	29% id, 77% cov
NCED3_ARATH / Q9LRR7: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic; AtNCED3; Protein SALT TOLERANT 1; EC 1.13.11.51 from Arabidopsis thaliana NCED3 / Q9LRR7: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana Q9LRR7: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana	27% id, 80% cov
A0A1B3B582: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Triticum aestivum	28% id, 79% cov
NCED1_SOLLC / O24023: 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic; LeNCED1; SlNCED1; Nine-cis-epoxycarotenoid dioxygenase 1; EC 1.13.11.51 from Solanum lycopersicum	28% id, 79% cov
NCED3_ORYSJ / Q5MBR5: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic; OsNCED3; EC 1.13.11.51 from Oryza sativa	29% id, 75% cov
NCED5_ORYSJ / Q5MBR3: 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic; OsNCED5; EC 1.13.11.51 from Oryza sativa	28% id, 77% cov
NCED1_PHAVU / Q9M6E8: 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic; PvNCED1; EC 1.13.11.51 from Phaseolus vulgaris Q9M6E8: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Phaseolus vulgaris	27% id, 78% cov
NCED9_ARATH / Q9M9F5: 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic; AtNCED9; EC 1.13.11.51 from Arabidopsis thaliana NCED9 / Q9M9F5: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana Q9M9F5: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana	28% id, 73% cov
A0A075W2E0: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Malus prunifolia	30% id, 56% cov
NCED5_ARATH / Q9C6Z1: Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic; AtNCED5; EC 1.13.11.51 from Arabidopsis thaliana Q9C6Z1: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana	31% id, 54% cov
Q2PHG1: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Lactuca sativa	29% id, 57% cov
A0A075W0Z7: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Malus prunifolia	32% id, 51% cov
NCED2_ARATH / O49505: 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic; AtNCED2; EC 1.13.11.51 from Arabidopsis thaliana NCED2 / O49505: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana O49505: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana	31% id, 53% cov
Q2PHG2: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Lactuca sativa	31% id, 52% cov
Q2PHG0: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Lactuca sativa	27% id, 60% cov
Q2PHF9: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Lactuca sativa	27% id, 60% cov
C4MK80: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Malus hupehensis	32% id, 51% cov
Q70KY0: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arachis hypogaea	31% id, 51% cov
Q460X8: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Stylosanthes guianensis	31% id, 51% cov
A0A1B3B5A6: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Triticum aestivum	30% id, 51% cov
NCED2_SOLLC / K4CJJ1: 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic; LeNCED2; SlNCED2; Nine-cis-epoxycarotenoid dioxygenase 2; EC 1.13.11.51 from Solanum lycopersicum	29% id, 53% cov
NCED_ONCHC / C3VEQ3: 9-cis-epoxycarotenoid dioxygenase, chloroplastic; OgNCED; EC 1.13.11.51 from Oncidium hybrid	30% id, 50% cov
A0A0M4UGS6: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Triticum aestivum	30% id, 49% cov
NCED1_ORYSJ / Q6YVJ0: 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic; OsNCED1; EC 1.13.11.51 from Oryza sativa	30% id, 45% cov
NCED6_ARATH / Q9LRM7: 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic; AtNCED6; EC 1.13.11.51 from Arabidopsis thaliana NCED6 / Q9LRM7: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana	34% id, 30% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory