Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 108 curated entries in PaperBLAST's database that match '1.4.1.2'.

These curated entries have 87 distinct sequences.

Running ublast with E ≤ 0.01

Found 19 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_634: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form
is similar to:
PaperBLAST

DHE2_PSEAE / Q9HZE0: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Pseudomonas aeruginosa

84% id,
100% cov

Psest_1944: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form from Pseudomonas stutzeri

72% id,
100% cov

DHE2_HALED / E1V4J5: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Halomonas elongata

52% id,
99% cov

More...

Pf6N2E2_4486: Glycine cleavage system H protein
is similar to:
PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli

62% id,
99% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

45% id,
93% cov

GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii

57% id,
71% cov

More...

Pf6N2E2_5558: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
is similar to:
PaperBLAST

P33195: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Escherichia coli

61% id,
99% cov

Q94B78: glycine cleavage system (subunit 4/5) (EC 1.4.1.27) from Arabidopsis thaliana

57% id,
92% cov

P26969: glycine cleavage system (subunit 3/4) (EC 1.4.1.27) from Pisum sativum

57% id,
91% cov

More...

Pf6N2E2_4485: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
is similar to:
PaperBLAST

P27248: glycine cleavage system (subunit 3/3) (EC 1.4.1.27) from Escherichia coli

54% id,
100% cov

Q5NHP0: glycine cleavage system (EC 1.4.1.27) from Francisella tularensis

50% id,
99% cov

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

40% id,
98% cov

More...

Pf6N2E2_5399: Ornithine cyclodeaminase (EC 4.3.1.12)
is similar to:
PaperBLAST

DAUB_PSEAE / Q9HXE4: NAD(P)H-dependent anabolic L-arginine dehydrogenase DauB; EC 1.4.1.25 from Pseudomonas aeruginosa
dauB / Q9HXE4: anabolic L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Q9HXE4: L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa

71% id,
73% cov

Pf6N2E2_4251: Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
is similar to:
PaperBLAST

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

56% id,
90% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

55% id,
91% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

55% id,
90% cov

More...

Pf6N2E2_5556: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
is similar to:
PaperBLAST

P28337: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Gallus gallus

48% id,
95% cov

P48728: glycine cleavage system (subunit 2/4) (EC 1.4.1.27) from Homo sapiens

47% id,
92% cov

P49364: glycine cleavage system (subunit 1/4) (EC 1.4.1.27) from Pisum sativum

45% id,
92% cov

More...

Pf6N2E2_5559: Glycine cleavage system H protein
is similar to:
PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli

48% id,
95% cov

P11183: H-protein-(lipoyl)lysine (EC 1.4.1.27) from Gallus gallus
P11183: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Gallus gallus

47% id,
75% cov

GCSH / P23434: glycine cleavage system H protein, mitochondrial (EC 1.4.1.27) from Homo sapiens
P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

48% id,
73% cov

More...

Pf6N2E2_5857: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)
is similar to:
PaperBLAST

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

49% id,
91% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

48% id,
92% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

48% id,
91% cov

More...

Pf6N2E2_5294: Leucine dehydrogenase (EC 1.4.1.9)
is similar to:
PaperBLAST

VDH_STRCO / Q06539: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces coelicolor
vdh / Q06539: valine dehydrogenase monomer (EC 1.4.1.23) from Streptomyces coelicolor

44% id,
92% cov

VDH_STRA4 / O69056: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces albus

43% id,
92% cov

DHPH_RHOSO / Q59771: Phenylalanine dehydrogenase; PheDH; EC 1.4.1.20 from Rhodococcus sp.

38% id,
92% cov

More...

Pf6N2E2_478: Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4)
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

37% id,
96% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

39% id,
91% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

38% id,
92% cov

More...

Pf6N2E2_446: Glutathione reductase (EC 1.8.1.7)
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

31% id,
97% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

32% id,
89% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

32% id,
89% cov

More...

Pf6N2E2_2274: Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1)
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

31% id,
96% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

33% id,
91% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

33% id,
90% cov

More...

Pf6N2E2_4720: Sarcosine oxidase alpha subunit (EC 1.5.3.1)
is similar to:
PaperBLAST

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

26% id,
98% cov

Pf6N2E2_448: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-)
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

27% id,
67% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

27% id,
62% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

27% id,
41% cov

Pf6N2E2_4702: DgcA Dimethylglycine demethylase subunit A
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

22% id,
69% cov

Pf6N2E2_5398: Ornithine cyclodeaminase (EC 4.3.1.12)
is similar to:
PaperBLAST

DAUB_PSEAE / Q9HXE4: NAD(P)H-dependent anabolic L-arginine dehydrogenase DauB; EC 1.4.1.25 from Pseudomonas aeruginosa
dauB / Q9HXE4: anabolic L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Q9HXE4: L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa

73% id,
19% cov

Pf6N2E2_1861: Ferredoxin reductase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

28% id,
39% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

26% id,
41% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

25% id,
37% cov

More...

Pf6N2E2_2914: P-hydroxybenzoate hydroxylase (EC 1.14.13.2)
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

30% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 18 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4946269-4947696 (frame -1) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana
Also see hits to annotated proteins above

56% id,
93% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum
Also see hits to annotated proteins above

54% id,
94% cov

510298-511944 (frame +1) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum
Also see hits to annotated proteins above

27% id,
64% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory