Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_4632: Amine oxidase [flavin-containing] (EC 1.4.3.4)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

24% id,
97% cov

Pf6N2E2_359: Opine oxidase subunit B
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

27% id,
40% cov

Pf6N2E2_4702: DgcA Dimethylglycine demethylase subunit A
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

33% id,
27% cov

Pf6N2E2_4720: Sarcosine oxidase alpha subunit (EC 1.5.3.1)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

29% id,
22% cov

Pf6N2E2_497: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

39% id,
14% cov

Pf6N2E2_4672: FIG00953568: hypothetical protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

32% id,
16% cov

Pf6N2E2_507: Hydrogen cyanide synthase HcnB / Opine oxidase subunit A
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

36% id,
13% cov

Pf6N2E2_365: Ferredoxin reductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

48% id,
9% cov

Pf6N2E2_5231: COG3380: Amine oxidase, flavin-containing
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

36% id,
12% cov

Pf6N2E2_2274: Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

54% id,
8% cov

Pf6N2E2_202: 4Fe-4S ferredoxin, iron-sulfur binding
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

48% id,
8% cov

Pf6N2E2_678: Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

36% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory