Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 5 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_1089: Delta 1-piperideine-2-carboxylate reductase (EC / Delta 1-pyrroline-2-carboxylate reductase (EC
is similar to:

dpkA / Q88GX6: Δ1-piperideine-2-carboxylate reductase (EC from Pseudomonas putida

76% id,
99% cov

Pf6N2E2_5399: Ornithine cyclodeaminase (EC
is similar to:

PY2CR_AZOBR / V5YW53: Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase; Pyr2C/Pip2C reductase; EC from Azospirillum brasilense
V5YW53: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] (EC from Azospirillum brasilense

26% id,
79% cov

Q485R8: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] (EC from Colwellia psychrerythraea

25% id,
55% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory