Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 5 curated entries in PaperBLAST's database that match '1.5.1.50'.

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_5274: FolM Alternative dihydrofolate reductase 1
is similar to:
PaperBLAST

FOLM_ECOLI / P0AFS3: Dihydromonapterin reductase; H(2)-MPt reductase; Dihydrofolate reductase; DHFR; EC 1.5.1.50; EC 1.5.1.3 from Escherichia coli
YdgB / b1606: dihydromonapterin reductase (EC 1.5.1.50; EC 1.5.1.3) from Escherichia coli
folM / P0AFS3: dihydromonapterin reductase (EC 1.5.1.50; EC 1.5.1.3) from Escherichia coli
P0AFS3: dihydromonapterin reductase (EC 1.5.1.50) from Escherichia coli

46% id,
97% cov

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

31% id,
90% cov

Pf6N2E2_995: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

30% id,
90% cov

Pf6N2E2_1959: Multiple polyol-specific dehydrogenase (EC 1.1.1.-)
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

27% id,
91% cov

Pf6N2E2_3728: 3-oxoacyl-[ACP] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

27% id,
90% cov

Pf6N2E2_78: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

27% id,
90% cov

Pf6N2E2_5209: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

24% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1164701-1165759 (frame -3) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum
Also see hits to annotated proteins above

30% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory