Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 7 curated entries in PaperBLAST's database that match '1.5.3.7' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_3581: L-pipecolate oxidase (1.5.3.7)
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

66% id,
98% cov

Pf6N2E2_4388: Gamma-glutamyl-putrescine oxidase (EC1.4.3.-)
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

28% id,
98% cov

Pf6N2E2_1318: FIG00553873: hypothetical protein
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

26% id,
94% cov

Pf6N2E2_359: Opine oxidase subunit B
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

26% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory