Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 5 curated entries in PaperBLAST's database that match '2.1.3.11' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_5579: Ornithine carbamoyltransferase (EC 2.1.3.3)
is similar to:
PaperBLAST

Echvi_3849: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Echinicola vietnamensis

31% id,
89% cov

Pf6N2E2_2909: Ornithine carbamoyltransferase (EC 2.1.3.3)
is similar to:
PaperBLAST

Echvi_3849: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Echinicola vietnamensis

26% id,
100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory