Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 11 curated entries in PaperBLAST's database that match '2.4.2.4' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_2413: FIG074102: hypothetical protein
is similar to:
PaperBLAST

PpnP / b0391: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
P0C037: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); thymidine phosphorylase (EC 2.4.2.4) from Escherichia coli

57% id,
99% cov

Pf6N2E2_4825: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
is similar to:
PaperBLAST

Q99N42: thymidine phosphorylase (EC 2.4.2.4) from Mus musculus

26% id,
46% cov

Pf6N2E2_304: Anthranilate phosphoribosyltransferase like (EC 2.4.2.18)
is similar to:
PaperBLAST

Q99N42: thymidine phosphorylase (EC 2.4.2.4) from Mus musculus

27% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory