Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 8 curated entries in PaperBLAST's database that match '2.5.1.73' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_3189: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
is similar to:
PaperBLAST

A4FWT8: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanococcus maripaludis

31% id,
38% cov

SPSS_METJA / Q59072: O-phospho-L-seryl-tRNA:Cys-tRNA synthase; Sep-tRNA:Cys-tRNA synthase; SepCysS; EC 2.5.1.73 from Methanocaldococcus jannaschii
pscS / Q59072: Sep-tRNA:Cys-tRNA synthase monomer (EC 2.5.1.73) from Methanocaldococcus jannaschii
Q59072: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanocaldococcus jannaschii

32% id,
19% cov

Pf6N2E2_2882: Isopenicillin N epimerase (EC 5.1.1.17)
is similar to:
PaperBLAST

SPSS1_ARCFU / O30207: O-phospho-L-seryl-tRNA:Cys-tRNA synthase 1; Sep-tRNA:Cys-tRNA synthase 1; SepCysS 1; EC 2.5.1.73 from Archaeoglobus fulgidus
O30207: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Archaeoglobus fulgidus

30% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory