Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_165: Ribokinase (EC 2.7.1.15)
is similar to:
PaperBLAST

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

94% id,
100% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

85% id,
100% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

79% id,
100% cov

More...

Pf6N2E2_2046: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
is similar to:
PaperBLAST

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

30% id,
94% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

37% id,
35% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

31% id,
29% cov

More...

Pf6N2E2_3653: ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase
is similar to:
PaperBLAST

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

27% id,
92% cov

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

32% id,
46% cov

BPHYT_RS25805: deoxyribose kinase (EC 2.7.1.15) from Burkholderia phytofirmans

29% id,
46% cov

More...

Pf6N2E2_629: 2-ketogluconate kinase (EC 2.7.1.13)
is similar to:
PaperBLAST

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

25% id,
100% cov

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

26% id,
89% cov

BT2803: ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron

26% id,
83% cov

More...

Pf6N2E2_3338: 1-phosphofructokinase (EC 2.7.1.56)
is similar to:
PaperBLAST

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

26% id,
93% cov

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

27% id,
85% cov

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

33% id,
35% cov

Pf6N2E2_3937: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

34% id,
42% cov

Pf6N2E2_512: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain
is similar to:
PaperBLAST

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

29% id,
43% cov

A0A0H2UL04: ribokinase (EC 2.7.1.15) from Vibrio cholerae

26% id,
41% cov

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

25% id,
42% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory