Curated BLAST
Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)
Found 32 curated entries in PaperBLAST's database that match '2.7.1.71' as complete word(s).
These curated entries have 17 distinct sequences.
Running ublast with E ≤ 0.01
Found 5 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query
Pf6N2E2_3755: Shikimate kinase I (EC 2.7.1.71)
is similar to: | PaperBLAST |
AROK_ECOLI / P0A6D7: Shikimate kinase 1; SK 1; Shikimate kinase I; SKI; EC 2.7.1.71 from Escherichia coli
AroK / b3390: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli
aroK / P0A6D7: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli
P0A6D7: shikimate kinase (EC 2.7.1.71) from Escherichia coli | 51% id,
92% cov |
A0A0M3KL09: shikimate kinase (EC 2.7.1.71) from Acinetobacter baumannii | 53% id,
87% cov |
AROK_MYCTU / P9WPY3: Shikimate kinase; SK; EC 2.7.1.71 from Mycobacterium tuberculosis
P9WPY3: shikimate kinase (EC 2.7.1.71) from Mycobacterium tuberculosis | 48% id,
91% cov |
CCNA_03103: shikimate kinase (EC 2.7.1.71) from Caulobacter crescentus | 45% id,
79% cov |
AROL_ECOLI / P0A6E1: Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Escherichia coli
AroL / b0388: shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli
aroL / P0A6E1: shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli | 35% id,
91% cov |
AROL_DICCH / P10880: Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Dickeya chrysanthemi | 34% id,
92% cov |
Q6GGG1: shikimate kinase (EC 2.7.1.71) from Staphylococcus aureus | 36% id,
76% cov |
SK_SOLLC / Q00497: Shikimate kinase, chloroplastic; EC 2.7.1.71 from Solanum lycopersicum | 38% id,
46% cov |
SK2_ORYSJ / Q5NTH3: Shikimate kinase 2, chloroplastic; OsSK2; EC 2.7.1.71 from Oryza sativa
Q5NTH3: shikimate kinase (EC 2.7.1.71) from Oryza sativa | 36% id,
49% cov |
SK3_ORYSJ / Q7X7H9: Shikimate kinase 3, chloroplastic; OsSK3; EC 2.7.1.71 from Oryza sativa
Q7X7H9: shikimate kinase (EC 2.7.1.71) from Oryza sativa | 34% id,
51% cov |
SK1_ORYSJ / Q5NTH4: Shikimate kinase 1, chloroplastic; OsSK1; EC 2.7.1.71 from Oryza sativa
Q5NTH4: shikimate kinase (EC 2.7.1.71) from Oryza sativa | 35% id,
49% cov |
SK1_ARATH / Q9SJ05: Shikimate kinase 1, chloroplastic; AtSK1; EC 2.7.1.71 from Arabidopsis thaliana
SK1 / Q9SJ05: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana | 37% id,
38% cov |
More... |
Pf6N2E2_3754: 3-dehydroquinate synthase (EC 4.2.3.4)
is similar to: | PaperBLAST |
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae | 36% id,
23% cov |
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans | 40% id,
19% cov |
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae | 35% id,
10% cov |
Pf6N2E2_1564: 3-dehydroquinate synthase (EC 4.2.3.4)
is similar to: | PaperBLAST |
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans | 28% id,
22% cov |
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae | 30% id,
12% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins.
These remaining reading frames may be pseudogenes, omissions in the genome annotation,
or N-terminal extensions of annotated proteins.
4376122-4376649 (frame -1) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to: | PaperBLAST |
AROK_ECOLI / P0A6D7: Shikimate kinase 1; SK 1; Shikimate kinase I; SKI; EC 2.7.1.71 from Escherichia coli
AroK / b3390: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli
aroK / P0A6D7: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli
P0A6D7: shikimate kinase (EC 2.7.1.71) from Escherichia coli
Also see hits to annotated proteins above | 52% id,
97% cov |
A0A0M3KL09: shikimate kinase (EC 2.7.1.71) from Acinetobacter baumannii
Also see hits to annotated proteins above | 53% id,
93% cov |
AROK_MYCTU / P9WPY3: Shikimate kinase; SK; EC 2.7.1.71 from Mycobacterium tuberculosis
P9WPY3: shikimate kinase (EC 2.7.1.71) from Mycobacterium tuberculosis
Also see hits to annotated proteins above | 48% id,
94% cov |
CCNA_03103: shikimate kinase (EC 2.7.1.71) from Caulobacter crescentus
Also see hits to annotated proteins above | 45% id,
84% cov |
AROL_ECOLI / P0A6E1: Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Escherichia coli
AroL / b0388: shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli
aroL / P0A6E1: shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli
Also see hits to annotated proteins above | 36% id,
95% cov |
AROL_DICCH / P10880: Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Dickeya chrysanthemi
Also see hits to annotated proteins above | 34% id,
97% cov |
Q6GGG1: shikimate kinase (EC 2.7.1.71) from Staphylococcus aureus
Also see hits to annotated proteins above | 37% id,
80% cov |
SK_SOLLC / Q00497: Shikimate kinase, chloroplastic; EC 2.7.1.71 from Solanum lycopersicum
Also see hits to annotated proteins above | 39% id,
49% cov |
SK2_ORYSJ / Q5NTH3: Shikimate kinase 2, chloroplastic; OsSK2; EC 2.7.1.71 from Oryza sativa
Q5NTH3: shikimate kinase (EC 2.7.1.71) from Oryza sativa
Also see hits to annotated proteins above | 36% id,
51% cov |
SK3_ORYSJ / Q7X7H9: Shikimate kinase 3, chloroplastic; OsSK3; EC 2.7.1.71 from Oryza sativa
Q7X7H9: shikimate kinase (EC 2.7.1.71) from Oryza sativa
Also see hits to annotated proteins above | 35% id,
53% cov |
SK1_ORYSJ / Q5NTH4: Shikimate kinase 1, chloroplastic; OsSK1; EC 2.7.1.71 from Oryza sativa
Q5NTH4: shikimate kinase (EC 2.7.1.71) from Oryza sativa
Also see hits to annotated proteins above | 36% id,
51% cov |
SK2_ARATH / Q8GY88: Shikimate kinase 2, chloroplastic; AtSK2; EC 2.7.1.71 from Arabidopsis thaliana
SK2 / Q8GY88: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana
Q8GY88: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana | 36% id,
43% cov |
SK1_ARATH / Q9SJ05: Shikimate kinase 1, chloroplastic; AtSK1; EC 2.7.1.71 from Arabidopsis thaliana
SK1 / Q9SJ05: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana
Also see hits to annotated proteins above | 38% id,
40% cov |
More... |
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory