Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.8' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_2897: Glucokinase (EC 2.7.1.2)
is similar to:
PaperBLAST

Glk / b2388: glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) from Escherichia coli
glk / P0A6V8: glucokinase (EC 2.7.1.1; EC 2.7.1.8) from Escherichia coli

40% id,
98% cov

Pf6N2E2_2118: Trehalose synthase (EC 5.4.99.16)
is similar to:
PaperBLAST

GLCNK_MYCS2 / I7FJX8: Glucosamine kinase; GlcN kinase; GlcNK; EC 2.7.1.8 from Mycolicibacterium smegmatis
I7FJX8: glucosamine kinase (EC 2.7.1.8) from Mycolicibacterium smegmatis

30% id,
80% cov

GLCNK_STRJI / A0A1H7TQR5: Glucosamine kinase; GlcN kinase; GlcNK; EC 2.7.1.8 from Streptacidiphilus jiangxiensis
A0A1H7TQR5: glucosamine kinase (EC 2.7.1.8) from Streptacidiphilus jiangxiensis

28% id,
73% cov

Pf6N2E2_629: 2-ketogluconate kinase (EC 2.7.1.13)
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

35% id,
44% cov

Pf6N2E2_804: Fructokinase (EC 2.7.1.4)
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

35% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory