Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 14 curated entries in PaperBLAST's database that match '3.2.1.48' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_1650: Sucrose-6-phosphate hydrolase (EC 3.2.1.B3)
is similar to:
PaperBLAST

Pf6N2E2_1650: Sucrose alpha-glucosidase (EC 3.2.1.48) from Pseudomonas fluorescens

100% id,
100% cov

AO356_28590: sucrose alpha-glucosidase (EC 3.2.1.48) from Pseudomonas fluorescens

89% id,
100% cov

Pf1N1B4_5116: Sucrose alpha-glucosidase (EC 3.2.1.48) from Pseudomonas fluorescens

86% id,
100% cov

Pf6N2E2_2118: Trehalose synthase (EC 5.4.99.16)
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

33% id,
94% cov

Q6UVM5: sucrose alpha-glucosidase (EC 3.2.1.48) from Xanthomonas axonopodis

30% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2517601-2520960 (frame -1) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae
Also see hits to annotated proteins above

32% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory