Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 6 curated entries in PaperBLAST's database that match '3.5.1.53' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_4777: 5-aminopentanamidase (EC 3.5.1.30)
is similar to:
PaperBLAST

AGUB_SOLLC / Q9XGI9: N-carbamoylputrescine amidase; EC 3.5.1.53 from Solanum lycopersicum

31% id,
86% cov

aguB / Q9I6J8: N-carbamoylputrascine amidohydrolase subunit (EC 3.5.1.53) from Pseudomonas aeruginosa

28% id,
91% cov

C8J_0890 / A0A1J6PBK3: N-carbamoylputrescine amidohydrolase (EC 3.5.1.53) from Campylobacter jejuni

26% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5519080-5519883 (frame -1) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

AGUB_SOLLC / Q9XGI9: N-carbamoylputrescine amidase; EC 3.5.1.53 from Solanum lycopersicum
Also see hits to annotated proteins above

30% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory