Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 16 curated entries in PaperBLAST's database that match '3.5.2.7' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_3798: Imidazolonepropionase (EC 3.5.2.7)
is similar to:
PaperBLAST

Pf6N2E2_3798: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

100% id,
100% cov

AO356_09595: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

97% id,
100% cov

PfGW456L13_317: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

92% id,
99% cov

More...

Pf6N2E2_2524: S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase
is similar to:
PaperBLAST

SO0095: Imidazolonepropionase (EC 3.5.2.7) from Shewanella oneidensis

27% id,
59% cov

hutI / O31200: imidazolonepropionase (EC 3.5.2.7) from Pseudomonas putida

23% id,
51% cov

hutI / O31200: imidazolonepropionase (EC 3.5.2.7) from Pseudomonas putida

39% id,
13% cov

More...

Pf6N2E2_257: Exoenzymes regulatory protein AepA precursor
is similar to:
PaperBLAST

HUTI_BACSU / P42084: Imidazolonepropionase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Bacillus subtilis
P42084: imidazolonepropionase (EC 3.5.2.7) from Bacillus subtilis

32% id,
24% cov

SM_b21166: Imidazolonepropionase (EC 3.5.2.7) from Sinorhizobium meliloti

34% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

320120-322186 (frame +2) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

SM_b21166: Imidazolonepropionase (EC 3.5.2.7) from Sinorhizobium meliloti
Also see hits to annotated proteins above

27% id,
23% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory