Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_3334: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
is similar to:
PaperBLAST

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

32% id,
90% cov

Q58P26: ornithine decarboxylase (EC 4.1.1.17) from Entamoeba histolytica

29% id,
94% cov

DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis

31% id,
87% cov

More...

Pf6N2E2_4419: Diaminopimelate decarboxylase (EC 4.1.1.20)
is similar to:
PaperBLAST

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

27% id,
82% cov

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

27% id,
78% cov

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

25% id,
84% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory