Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 12 curated entries in PaperBLAST's database that match '4.1.2.29' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_512: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain
is similar to:
PaperBLAST

Pf6N2E2_512: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens

100% id,
100% cov

AO356_23160: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens

95% id,
100% cov

AO353_21335: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens

92% id,
100% cov

More...

Pf6N2E2_4660: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
is similar to:
PaperBLAST

IOLJ_BACSU / P42420: 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase; DKGP aldolase; EC 4.1.2.29 from Bacillus subtilis
iolJ / P42420: 5-dehydro-2-deoxyphosphogluconate aldolase (EC 4.1.2.29) from Bacillus subtilis

33% id,
99% cov

PGA1_c07220: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) from Phaeobacter inhibens

36% id,
75% cov

Pf6N2E2_629: 2-ketogluconate kinase (EC 2.7.1.13)
is similar to:
PaperBLAST

AO353_21335: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens

31% id,
51% cov

AO356_23160: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens

31% id,
50% cov

PS417_11850: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas simiae

30% id,
51% cov

More...

Pf6N2E2_165: Ribokinase (EC 2.7.1.15)
is similar to:
PaperBLAST

CCNA_01356: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Caulobacter crescentus

30% id,
20% cov

HSERO_RS12125: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Herbaspirillum seropedicae

28% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory