Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 48 curated entries in PaperBLAST's database that match '4.1.3.1' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_279: Isocitrate lyase (EC 4.1.3.1)
is similar to:
PaperBLAST

Pf1N1B4_4042: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas fluorescens

98% id,
100% cov

Sama_2380: Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis

79% id,
99% cov

SO1484: Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis

78% id,
98% cov

More...

Pf6N2E2_6061: Methylisocitrate lyase (EC 4.1.3.30)
is similar to:
PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus

34% id,
90% cov

ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii

38% id,
48% cov

A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii

35% id,
43% cov

Pf6N2E2_2185: carboxyphosphonoenolpyruvate phosphonomutase, putative
is similar to:
PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus

29% id,
82% cov

ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii

31% id,
51% cov

Sama_2380: Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis

27% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory