Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.141' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_862: Fumarylacetoacetate hydrolase family protein
is similar to:
PaperBLAST

HSERO_RS19360: 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Herbaspirillum seropedicae

62% id,
97% cov

Ga0059261_1895: 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Sphingomonas koreensis

58% id,
97% cov

xylX / A0A0H3C4T2: 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Caulobacter vibrioides
CCNA_00866: 2-keto-3-deoxyxylonate dehydratase XylX (EC 4.2.1.141) from Caulobacter crescentus

56% id,
98% cov

More...

Pf6N2E2_1667: Fumarylacetoacetate hydrolase family protein
is similar to:
PaperBLAST

HSERO_RS19360: 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Herbaspirillum seropedicae

61% id,
97% cov

Ga0059261_1895: 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Sphingomonas koreensis

58% id,
97% cov

xylX / A0A0H3C4T2: 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Caulobacter vibrioides
CCNA_00866: 2-keto-3-deoxyxylonate dehydratase XylX (EC 4.2.1.141) from Caulobacter crescentus

57% id,
98% cov

More...

Pf6N2E2_1662: 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.
is similar to:
PaperBLAST

KDXD_HALVD / D4GP28: Probable 2-keto-3-deoxyxylonate dehydratase; KDXD; EC 4.2.1.141 from Haloferax volcanii
xacE / D4GP28: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43; EC 4.2.1.141) from Haloferax volcanii

27% id,
89% cov

KDAD_SACS2 / Q97UA0: 2-dehydro-3-deoxy-D-arabinonate dehydratase; 2-keto-3-deoxy-D-arabinonate dehydratase; KdaD; EC 4.2.1.141 from Saccharolobus solfataricus
kdaD / Q97UA0: 2-keto-3-deoxy-D-arabinonate dehydratase subunit (EC 4.2.1.141) from Saccharolobus solfataricus
Q97UA0: 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Saccharolobus solfataricus

30% id,
54% cov

Pf6N2E2_865: Fumarylacetoacetate hydrolase family protein
is similar to:
PaperBLAST

Q4J7I6: 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Sulfolobus acidocaldarius

27% id,
62% cov

KDAD_SACS2 / Q97UA0: 2-dehydro-3-deoxy-D-arabinonate dehydratase; 2-keto-3-deoxy-D-arabinonate dehydratase; KdaD; EC 4.2.1.141 from Saccharolobus solfataricus
kdaD / Q97UA0: 2-keto-3-deoxy-D-arabinonate dehydratase subunit (EC 4.2.1.141) from Saccharolobus solfataricus
Q97UA0: 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Saccharolobus solfataricus

28% id,
52% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory