Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 13 curated entries in PaperBLAST's database that match '4.2.1.25' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_609: L-arabonate dehydratase (EC 4.2.1.25)
is similar to:
PaperBLAST

Pf6N2E2_609: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

100% id,
100% cov

AO356_24585: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

99% id,
100% cov

PfGW456L13_3320: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

97% id,
100% cov

More...

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82)
is similar to:
PaperBLAST

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

45% id,
99% cov

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum
I9XDU6: L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum

46% id,
97% cov

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

44% id,
99% cov

More...

Pf6N2E2_5977: Galactonate dehydratase (EC 4.2.1.6)
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

36% id,
97% cov

xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii

31% id,
89% cov

Pf6N2E2_4564: Dihydroxy-acid dehydratase (EC 4.2.1.9)
is similar to:
PaperBLAST

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

30% id,
92% cov

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

35% id,
58% cov

HSERO_RS05205: L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae

32% id,
61% cov

More...

Pf6N2E2_2898: Phosphogluconate dehydratase (EC 4.2.1.12)
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum
I9XDU6: L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum

31% id,
84% cov

Shewana3_2070: L-arabonate dehydratase (EC 4.2.1.25) from Shewanella sp.

30% id,
84% cov

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

29% id,
84% cov

Pf6N2E2_3234: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

26% id,
88% cov

Pf6N2E2_1104: Gluconate dehydratase (EC 4.2.1.39)
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

25% id,
86% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory