Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.44' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_513: Inosose dehydratase (EC 4.2.1.44)
is similar to:
PaperBLAST

Pf6N2E2_513: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas fluorescens

100% id,
100% cov

AO356_23165: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas fluorescens

98% id,
100% cov

AO353_21340: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas fluorescens

93% id,
99% cov

More...

Pf6N2E2_884: Inosose isomerase (EC 5.3.99.-)
is similar to:
PaperBLAST

HSERO_RS12135: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Herbaspirillum seropedicae

23% id,
85% cov

PS417_11855: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas simiae

27% id,
50% cov

Pf6N2E2_324: Inosose isomerase (EC 5.3.99.-)
is similar to:
PaperBLAST

PGA1_c07270: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Phaeobacter inhibens

31% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory