Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.80' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_1313: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-)
is similar to:
PaperBLAST

xylJ / P23107: 2-oxopent-4-enoate hydratase subunit (EC 4.2.1.80) from Pseudomonas putida

39% id,
100% cov

cnbE / Q38M38: 2-oxopent-4-enoate hydratase (EC 4.2.1.80) from Comamonas testosteroni

38% id,
93% cov

AMNF_PSESP / Q9KWS4: 2-oxopent-4-enoate hydratase; 2-keto-4-pentenoate hydratase; EC 4.2.1.80 from Pseudomonas sp.

36% id,
98% cov

More...

Pf6N2E2_864: 2-keto-4-pentenoate hydratase (EC 4.2.1.80)
is similar to:
PaperBLAST

cnbE / Q38M38: 2-oxopent-4-enoate hydratase (EC 4.2.1.80) from Comamonas testosteroni

26% id,
89% cov

Pf6N2E2_6018: Fumarylacetoacetate hydrolase family protein
is similar to:
PaperBLAST

AMNF_PSESP / Q9KWS4: 2-oxopent-4-enoate hydratase; 2-keto-4-pentenoate hydratase; EC 4.2.1.80 from Pseudomonas sp.

25% id,
57% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory