Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 130 curated entries in PaperBLAST's database that match '4.2.1.9'.

These curated entries have 94 distinct sequences.

Running ublast with E ≤ 0.01

Found 21 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_2631: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
is similar to:
PaperBLAST

Q48G05: 4a-hydroxytetrahydrobiopterin dehydratase (EC 4.2.1.96) from Pseudomonas syringae

92% id,
100% cov

PDL2_ARATH / Q6QJ72: Pterin-4-alpha-carbinolamine dehydratase 2, mitochondrial; 4-alpha-hydroxy-tetrahydropterin dehydratase; PCD/DCoH-like protein 2; EC 4.2.1.96 from Arabidopsis thaliana

31% id,
60% cov

Cr-1 / A8IT23: pterin-4alpha-carbinolamine dehydratase (EC 4.2.1.96) from Chlamydomonas reinhardtii

33% id,
56% cov

Pf6N2E2_6063: 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
is similar to:
PaperBLAST

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

84% id,
100% cov

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium
acnA / Q8ZP52: aconitate hydratase 1 (EC 4.2.1.99) from Salmonella typhimurium

45% id,
98% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

45% id,
98% cov

More...

Pf6N2E2_1104: Gluconate dehydratase (EC 4.2.1.39)
is similar to:
PaperBLAST

RHMD_POLSJ / Q12DF1: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Polaromonas sp.

81% id,
99% cov

lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp.

81% id,
99% cov

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

64% id,
100% cov

More...

Pf6N2E2_564: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
is similar to:
PaperBLAST

ACNB_ECOLI / P36683: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Escherichia coli
YacI / b0118: AcnB (EC 4.2.1.99) from Escherichia coli
acnB / P36683: AcnB (EC 4.2.1.99) from Escherichia coli

78% id,
99% cov

ACNB_SALTY / Q8ZRS8: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium
acnB / Q8ZRS8: aconitate hydratase 2 (EC 4.2.1.99) from Salmonella typhimurium

77% id,
99% cov

Pf6N2E2_4564: Dihydroxy-acid dehydratase (EC 4.2.1.9)
is similar to:
PaperBLAST

ILVD_RHIL3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium leguminosarum

77% id,
99% cov

ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli
IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli
ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli

75% id,
100% cov

ILVD_CAUVC / P55186: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Caulobacter vibrioides

72% id,
100% cov

More...

Pf6N2E2_2301: Aconitate hydratase (EC 4.2.1.3)
is similar to:
PaperBLAST

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium
acnA / Q8ZP52: aconitate hydratase 1 (EC 4.2.1.99) from Salmonella typhimurium

69% id,
99% cov

ACON_LEGPH / P37032: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; IP210; Iron-responsive protein-like; IRP-like; Major iron-containing protein; MICP; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Legionella pneumophila

68% id,
99% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

62% id,
99% cov

More...

Pf6N2E2_1300: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91)
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

50% id,
91% cov

Pf6N2E2_609: L-arabonate dehydratase (EC 4.2.1.25)
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

39% id,
95% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

39% id,
94% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

36% id,
96% cov

More...

Pf6N2E2_2898: Phosphogluconate dehydratase (EC 4.2.1.12)
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

32% id,
99% cov

ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli
IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli
ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli

30% id,
99% cov

ILVD_RHIL3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium leguminosarum

31% id,
93% cov

More...

Pf6N2E2_860: Altronate dehydratase (EC 4.2.1.7)
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

34% id,
92% cov

BPHYT_RS34235: putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

39% id,
78% cov

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82)
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

33% id,
96% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

34% id,
93% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

31% id,
99% cov

More...

Pf6N2E2_2520: Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51)
is similar to:
PaperBLAST

AROD2_ARATH / Q9SSE7: Arogenate dehydratase/prephenate dehydratase 2, chloroplastic; AtADT2; AtPDT2; EC 4.2.1.51; EC 4.2.1.91 from Arabidopsis thaliana
Q9SSE7: arogenate dehydratase (EC 4.2.1.91) from Arabidopsis thaliana

33% id,
87% cov

AROD1_ARATH / Q9SA96: Arogenate dehydratase/prephenate dehydratase 1, chloroplastic; AtADT1; AtPDT1; EC 4.2.1.51; EC 4.2.1.91 from Arabidopsis thaliana
Q9SA96: arogenate dehydratase (EC 4.2.1.91) from Arabidopsis thaliana

29% id,
89% cov

AROD2_PETHY / D3U716: Arogenate dehydratase 2; PhADT2; Prephenate dehydratase ADT3; EC 4.2.1.91; EC 4.2.1.51 from Petunia hybrida
D3U716: arogenate dehydratase (EC 4.2.1.91) from Petunia x

35% id,
72% cov

More...

Pf6N2E2_3296: D-galactarate dehydratase (EC 4.2.1.42)
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

31% id,
91% cov

BPHYT_RS34235: putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

27% id,
86% cov

Pf6N2E2_3619: NAD(P)HX epimerase / NAD(P)HX dehydratase
is similar to:
PaperBLAST

P94368: ADP-dependent NAD(P)H-hydrate dehydratase (EC 4.2.1.136); ATP-dependent NAD(P)H-hydrate dehydratase (EC 4.2.1.93) from Bacillus subtilis

29% id,
85% cov

Pf6N2E2_5977: Galactonate dehydratase (EC 4.2.1.6)
is similar to:
PaperBLAST

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

32% id,
64% cov

RHMD_SALTY / Q8ZNF9: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Salmonella typhimurium
Q8ZNF9: L-rhamnonate dehydratase (EC 4.2.1.90) from Salmonella enterica

31% id,
66% cov

lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp.

30% id,
65% cov

More...

Pf6N2E2_3234: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

25% id,
81% cov

RHMD_SALTY / Q8ZNF9: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Salmonella typhimurium
Q8ZNF9: L-rhamnonate dehydratase (EC 4.2.1.90) from Salmonella enterica

24% id,
80% cov

A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis

25% id,
75% cov

Pf6N2E2_5395: Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

25% id,
67% cov

Pf6N2E2_1499: ABC transporter amino acid-binding protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

27% id,
54% cov

Pf6N2E2_5769: Catalase (EC 1.11.1.6)
is similar to:
PaperBLAST

B2J5P3: hydroperoxide dehydratase (EC 4.2.1.92) from Nostoc punctiforme

30% id,
47% cov

Pf6N2E2_692: Glucarate dehydratase (EC 4.2.1.40)
is similar to:
PaperBLAST

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

27% id,
25% cov

RHMD_SALTY / Q8ZNF9: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Salmonella typhimurium
Q8ZNF9: L-rhamnonate dehydratase (EC 4.2.1.90) from Salmonella enterica

27% id,
25% cov

Pf6N2E2_64: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
is similar to:
PaperBLAST

citB / P09339: aconitate hydratase (bifunctional aconitase) (EC 4.2.1.99; EC 4.2.1.3) from Bacillus subtilis

31% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 19 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory