Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 11 curated entries in PaperBLAST's database that match '4.2.1.90' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_1104: Gluconate dehydratase (EC 4.2.1.39)
is similar to:
PaperBLAST

RHMD_POLSJ / Q12DF1: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Polaromonas sp.

81% id,
99% cov

lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp.

81% id,
99% cov

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

64% id,
100% cov

More...

Pf6N2E2_860: Altronate dehydratase (EC 4.2.1.7)
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

34% id,
92% cov

BPHYT_RS34235: putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

39% id,
78% cov

Pf6N2E2_3296: D-galactarate dehydratase (EC 4.2.1.42)
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

31% id,
91% cov

BPHYT_RS34235: putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

27% id,
86% cov

Pf6N2E2_5977: Galactonate dehydratase (EC 4.2.1.6)
is similar to:
PaperBLAST

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

32% id,
64% cov

RHMD_SALTY / Q8ZNF9: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Salmonella typhimurium
Q8ZNF9: L-rhamnonate dehydratase (EC 4.2.1.90) from Salmonella enterica

31% id,
66% cov

lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp.

30% id,
65% cov

More...

Pf6N2E2_3234: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

25% id,
81% cov

RHMD_SALTY / Q8ZNF9: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Salmonella typhimurium
Q8ZNF9: L-rhamnonate dehydratase (EC 4.2.1.90) from Salmonella enterica

24% id,
80% cov

A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis

25% id,
75% cov

Pf6N2E2_692: Glucarate dehydratase (EC 4.2.1.40)
is similar to:
PaperBLAST

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

27% id,
25% cov

RHMD_SALTY / Q8ZNF9: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Salmonella typhimurium
Q8ZNF9: L-rhamnonate dehydratase (EC 4.2.1.90) from Salmonella enterica

27% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory