Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_3142: Threonine synthase (EC 4.2.3.1)
is similar to:
PaperBLAST

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

57% id,
100% cov

THRC_CORGL / P23669: Threonine synthase; TS; EC 4.2.3.1 from Corynebacterium glutamicum

44% id,
98% cov

Q2SWH9: threonine synthase (EC 4.2.3.1) from Burkholderia thailandensis

43% id,
99% cov

More...

Pf6N2E2_4961: Threonine synthase (EC 4.2.3.1)
is similar to:
PaperBLAST

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

43% id,
89% cov

THRC_CORGL / P23669: Threonine synthase; TS; EC 4.2.3.1 from Corynebacterium glutamicum

32% id,
98% cov

THRC_YEAST / P16120: Threonine synthase; TS; EC 4.2.3.1 from Saccharomyces cerevisiae
P16120: threonine synthase (EC 4.2.3.1) from Saccharomyces cerevisiae

35% id,
87% cov

More...

Pf6N2E2_5296: Threonine synthase (EC 4.2.3.1)
is similar to:
PaperBLAST

THRC_METAC / Q8TQD4: Threonine synthase; TS; EC 4.2.3.1 from Methanosarcina acetivorans
GB|AAM05023.1: threonine synthase; EC 4.2.3.1 from Methanosarcina acetivorans

34% id,
99% cov

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

34% id,
97% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

33% id,
94% cov

More...

Pf6N2E2_802: Threonine dehydratase biosynthetic (EC 4.3.1.19)
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

29% id,
84% cov

Pf6N2E2_5721: Cysteine synthase B (EC 2.5.1.47)
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

27% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

6537459-6538445 (frame +3) on unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

30% id,
40% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory