Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 22 curated entries in PaperBLAST's database that match '4.3.2.1' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_1798: Argininosuccinate lyase (EC 4.3.2.1)
is similar to:
PaperBLAST

P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis

53% id,
98% cov

ARLY_NOSS1 / Q8YQE6: Argininosuccinate lyase; ASAL; Arginosuccinase; NoArgH; EC 4.3.2.1 from Nostoc sp.

42% id,
100% cov

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

42% id,
99% cov

More...

Pf6N2E2_4429: Argininosuccinate lyase (EC 4.3.2.1)
is similar to:
PaperBLAST

ARLY_SYNY3 / P73257: Argininosuccinate lyase; ASAL; Arginosuccinase; SyArgH; EC 4.3.2.1 from Synechocystis sp.

52% id,
100% cov

ARLY_NOSS1 / Q8YQE6: Argininosuccinate lyase; ASAL; Arginosuccinase; NoArgH; EC 4.3.2.1 from Nostoc sp.

51% id,
98% cov

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

50% id,
99% cov

More...

Pf6N2E2_2831: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)
is similar to:
PaperBLAST

P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis

26% id,
82% cov

Pf6N2E2_2536: Fumarate hydratase class II (EC 4.2.1.2)
is similar to:
PaperBLAST

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

22% id,
78% cov

Pf6N2E2_4085: Aspartate ammonia-lyase (EC 4.3.1.1)
is similar to:
PaperBLAST

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

26% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory