Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 18 curated entries in PaperBLAST's database that match '5.3.1.24' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_71: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
is similar to:
PaperBLAST

trpF / GB|AAA21897.1: phosphoribosylanthranilate isomerase; EC 5.3.1.24 from Acinetobacter calcoaceticus

50% id,
99% cov

trpF: phosphoribosylanthranilate isomerase; EC 5.3.1.24 from Burkholderia multivorans

49% id,
91% cov

trpF / Q56320: phosphoribosylanthranilate isomerase subunit (EC 5.3.1.24) from Thermotoga maritima

44% id,
97% cov

More...

Pf6N2E2_3839: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
is similar to:
PaperBLAST

HIS4_STRCO / P16250: Phosphoribosyl isomerase A; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; N-(5'-phosphoribosyl)anthranilate isomerase; PRAI; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16; EC 5.3.1.24 from Streptomyces coelicolor
P16250: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Streptomyces coelicolor

34% id,
96% cov

Pf6N2E2_3838: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
is similar to:
PaperBLAST

HIS4_STRCO / P16250: Phosphoribosyl isomerase A; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; N-(5'-phosphoribosyl)anthranilate isomerase; PRAI; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16; EC 5.3.1.24 from Streptomyces coelicolor
P16250: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Streptomyces coelicolor

26% id,
96% cov

Pf6N2E2_4826: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
is similar to:
PaperBLAST

TrpC / b1262: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli
trpC / P00909: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli
P00909: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Escherichia coli

41% id,
58% cov

P24920: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Phytophthora parasitica

36% id,
43% cov

Pf6N2E2_433: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)
is similar to:
PaperBLAST

HIS4_STRCO / P16250: Phosphoribosyl isomerase A; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; N-(5'-phosphoribosyl)anthranilate isomerase; PRAI; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16; EC 5.3.1.24 from Streptomyces coelicolor
P16250: phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Streptomyces coelicolor

34% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory