Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 1 curated entries in PaperBLAST's database that match '2,4-diketo-3-deoxy-L-rhamnonate hydrolase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_1662: 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.
is similar to:
PaperBLAST

BPHYT_RS34210: 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) from Burkholderia phytofirmans

76% id,
100% cov

Pf6N2E2_865: Fumarylacetoacetate hydrolase family protein
is similar to:
PaperBLAST

BPHYT_RS34210: 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) from Burkholderia phytofirmans

60% id,
100% cov

Pf6N2E2_229: Putative fumarylacetoacetate (FAA) hydrolase
is similar to:
PaperBLAST

BPHYT_RS34210: 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) from Burkholderia phytofirmans

37% id,
96% cov

Pf6N2E2_1308: 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-)
is similar to:
PaperBLAST

BPHYT_RS34210: 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) from Burkholderia phytofirmans

34% id,
98% cov

Pf6N2E2_1307: 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-)
is similar to:
PaperBLAST

BPHYT_RS34210: 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) from Burkholderia phytofirmans

34% id,
75% cov

Pf6N2E2_3934: Fumarylacetoacetate hydrolase family protein
is similar to:
PaperBLAST

BPHYT_RS34210: 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) from Burkholderia phytofirmans

37% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory