Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)

Found 3 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase%LeuD' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query

Pf6N2E2_64: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
is similar to:
PaperBLAST

LeuD / b0071: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli
leuD / P30126: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli

64% id,
98% cov

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud) from methhanocaldococcus jannaschii dsm2661 (mj1271)

33% id,
68% cov

Pf6N2E2_2301: Aconitate hydratase (EC 4.2.1.3)
is similar to:
PaperBLAST

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud) from methhanocaldococcus jannaschii dsm2661 (mj1271)

30% id,
65% cov

Pf6N2E2_6063: 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
is similar to:
PaperBLAST

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud) from methhanocaldococcus jannaschii dsm2661 (mj1271)

29% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory