Searching in Pseudomonas fluorescens FW300-N2E2 (pseudo6_N2E2)
Found 4 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%large' as complete word(s).
These curated entries have 4 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E2, or try another query
| Pf6N2E2_3364: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) is similar to: | PaperBLAST |
CARB_ARATH / Q42601: Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 from Arabidopsis thaliana | 58% id, 91% cov |
CARB_BACSU / P25994: Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 from Bacillus subtilis | 50% id, 98% cov |
carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum | 45% id, 96% cov |
| Pf6N2E2_3512: Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) is similar to: | PaperBLAST |
CARB_BACSU / P25994: Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 from Bacillus subtilis | 23% id, 29% cov |
CARB_ARATH / Q42601: Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 from Arabidopsis thaliana | 21% id, 16% cov |
| Pf6N2E2_2781: Urea carboxylase (EC 6.3.4.6) is similar to: | PaperBLAST |
CARB_YEAST / P03965: Carbamoyl-phosphate synthase arginine-specific large chain; Arginine-specific carbamoyl-phosphate synthetase, ammonia chain; EC 6.3.5.5 from Saccharomyces cerevisiae | 23% id, 28% cov |
| Pf6N2E2_5358: D-alanine--D-alanine ligase (EC 6.3.2.4) is similar to: | PaperBLAST |
carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum | 25% id, 24% cov |
CARB_BACSU / P25994: Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 from Bacillus subtilis | 22% id, 22% cov |
CARB_ARATH / Q42601: Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 from Arabidopsis thaliana | 24% id, 17% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 3893742-3896984 (frame -2) on unitig_0|quiver.unitig_1|quiver|pilon is similar to: | PaperBLAST |
CARB_ARATH / Q42601: Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 from Arabidopsis thaliana | 58% id, 92% cov |
Lawrence Berkeley National Laboratory