Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 8 curated entries in PaperBLAST's database that match '1.1.1.140'.

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU3137: oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

BWI76_RS22230: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

31% id,
98% cov

D4I194: sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Erwinia amylovora

30% id,
100% cov

SRLD_ECOLI / P05707: Sorbitol-6-phosphate 2-dehydrogenase; Glucitol-6-phosphate dehydrogenase; Ketosephosphate reductase; EC 1.1.1.140 from Escherichia coli
GutD / b2705: sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Escherichia coli
srlD: sorbitol-6-phosphate dehydrogenase; EC 1.1.1.140 from Escherichia coli
srlD / P05707: sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Escherichia coli

30% id,
98% cov

VIMSS206645: 3-oxoacyl-(acyl-carrier-protein) reductase
is similar to:
PaperBLAST

BWI76_RS01745: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis

32% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1846657-1847685 (frame +1) on 1944
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

31% id,
69% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory