Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 10 curated entries in PaperBLAST's database that match '1.1.1.23' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0796: histidinol dehydrogenase
is similar to:
PaperBLAST

Q8G2R2: histidinol dehydrogenase (EC 1.1.1.23) from Brucella suis

46% id,
95% cov

HISX_MYCTU / P9WNW9: Histidinol dehydrogenase; HDH; EC 1.1.1.23 from Mycobacterium tuberculosis
P9WNW9: histidinol dehydrogenase (EC 1.1.1.23) from Mycobacterium tuberculosis

44% id,
92% cov

HISX_SALTY / P10370: Histidinol dehydrogenase; HDH; EC 1.1.1.23 from Salmonella typhimurium

42% id,
92% cov

More...

DVU0113: phosphoribosyl-AMP cyclohydrolase
is similar to:
PaperBLAST

A1BPP9: histidinol dehydrogenase (EC 1.1.1.23) from Geotrichum candidum

34% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

147093-147491 (frame +3) on 1944
is similar to:
PaperBLAST

A1BPP9: histidinol dehydrogenase (EC 1.1.1.23) from Geotrichum candidum
Also see hits to annotated proteins above

32% id,
12% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory