Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 131 curated entries in PaperBLAST's database that match '1.1.1.27'.

These curated entries have 102 distinct sequences.

Running ublast with E ≤ 0.01

Found 25 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0090: GDP-fucose synthetase
is similar to:
PaperBLAST

FCL2_ARATH / Q9LMU0: Putative GDP-L-fucose synthase 2; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 2; AtGER2; EC 1.1.1.271 from Arabidopsis thaliana
Q9LMU0: GDP-L-fucose synthase (EC 1.1.1.271) from Arabidopsis thaliana

65% id,
94% cov

FCL1_ARATH / O49213: GDP-L-fucose synthase 1; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 1; AtFX; AtGER1; EC 1.1.1.271 from Arabidopsis thaliana
GER1 / O49213: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase (EC 1.1.1.271) from Arabidopsis thaliana
O49213: GDP-L-fucose synthase (EC 1.1.1.271) from Arabidopsis thaliana

64% id,
96% cov

FCL_ECOLI / P32055: GDP-L-fucose synthase; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase; EC 1.1.1.271 from Escherichia coli
YefB / b2052: GDP-L-fucose synthase (EC 1.1.1.271) from Escherichia coli
fcl / P32055: GDP-L-fucose synthase (EC 1.1.1.271) from Escherichia coli
P32055: GDP-L-fucose synthase (EC 1.1.1.271) from Escherichia coli

61% id,
98% cov

More...

DVU1784: oxidoreductase, short-chain dehydrogenase/reductase family
is similar to:
PaperBLAST

SDH_RHIRD / Q9KWN1: Serine 3-dehydrogenase; EC 1.1.1.276 from Rhizobium radiobacter

53% id,
99% cov

DHR11_HUMAN / Q6UWP2: Dehydrogenase/reductase SDR family member 11; 17-beta-hydroxysteroid dehydrogenase; 3-beta-hydroxysteroid 3-dehydrogenase; Estradiol 17-beta-dehydrogenase; Short-chain dehydrogenase/reductase family 24C member 1; EC 1.1.1.270; EC 1.1.1.62 from Homo sapiens

32% id,
93% cov

Q73SC8: (+)-trans-carveol dehydrogenase (EC 1.1.1.275) from Mycobacterium avium

34% id,
71% cov

More...

DVU1782: iron-sulfur cluster-binding protein
is similar to:
PaperBLAST

Q5F883: L-lactate dehydrogenase (subunit 1/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

51% id,
96% cov

lutB / O07021: component of an iron-sulfur oxidase linked to L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

39% id,
100% cov

Q5F884: L-lactate dehydrogenase (subunit 2/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

30% id,
44% cov

More...

DVU1783: cysteine-rich domain protein
is similar to:
PaperBLAST

Q5F885: L-lactate dehydrogenase (subunit 3/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

49% id,
95% cov

lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

41% id,
99% cov

DVU0600: L-lactate dehydrogenase
is similar to:
PaperBLAST

B9MKZ8: L-lactate dehydrogenase (EC 1.1.1.27) from Caldicellulosiruptor bescii

47% id,
98% cov

B1A4R6: L-lactate dehydrogenase (EC 1.1.1.27) from Thermoanaerobacter ethanolicus

46% id,
97% cov

W8CXQ9: L-lactate dehydrogenase (EC 1.1.1.27) from Weizmannia coagulans

45% id,
99% cov

More...

DVU3033: iron-sulfur cluster-binding protein
is similar to:
PaperBLAST

lutB / O07021: component of an iron-sulfur oxidase linked to L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

38% id,
89% cov

Q5F883: L-lactate dehydrogenase (subunit 1/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

40% id,
83% cov

lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

31% id,
99% cov

More...

DVU3137: oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

Q73SC8: (+)-trans-carveol dehydrogenase (EC 1.1.1.275) from Mycobacterium avium

34% id,
97% cov

A0A0H2ZWY3: (+)-trans-carveol dehydrogenase (EC 1.1.1.275) from Mycobacterium avium

31% id,
100% cov

A0A0H2ZTN5: (+)-trans-carveol dehydrogenase (EC 1.1.1.275) from Mycobacterium avium

29% id,
100% cov

More...

DVU1781: conserved hypothetical protein
is similar to:
PaperBLAST

Q5F884: L-lactate dehydrogenase (subunit 2/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

32% id,
94% cov

lutC / O32259: component of an iron-sulfur oxidase for L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

37% id,
40% cov

DVU3028: iron-sulfur cluster-binding protein
is similar to:
PaperBLAST

lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

30% id,
98% cov

DVU0339: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

HADHA_ASPOR / Q2UH56: 2-hydroxyacid dehydrogenase A; 2-HadhA; EC 1.1.1.272 from Aspergillus oryzae

31% id,
92% cov

MORA_ASPOR / Q2U0N3: 4-methyl-2-oxopentanoate reductase A; MOA reductase A; MorA; 2-hydroxyacid dehydrogenase D; 2-HadhD; EC 1.1.1.272 from Aspergillus oryzae
morA / Q2U0N3: D-2-hydroxyacid dehydrogenase (NADP+) (EC 1.1.1.272) from Aspergillus oryzae

35% id,
78% cov

ddh / Q2VEQ7: (D)-2-hydroxyacid dehydrogenase (NADP+) monomer (EC 1.1.1.272) from Haloferax mediterranei
Q2VEQ7: D-2-hydroxyacid dehydrogenase (NADP+) (EC 1.1.1.272) from Haloferax mediterranei

31% id,
69% cov

DVU1412: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

HADHA_ASPOR / Q2UH56: 2-hydroxyacid dehydrogenase A; 2-HadhA; EC 1.1.1.272 from Aspergillus oryzae

31% id,
89% cov

ddh / Q2VEQ7: (D)-2-hydroxyacid dehydrogenase (NADP+) monomer (EC 1.1.1.272) from Haloferax mediterranei
Q2VEQ7: D-2-hydroxyacid dehydrogenase (NADP+) (EC 1.1.1.272) from Haloferax mediterranei

35% id,
76% cov

MORA_ASPOR / Q2U0N3: 4-methyl-2-oxopentanoate reductase A; MOA reductase A; MorA; 2-hydroxyacid dehydrogenase D; 2-HadhD; EC 1.1.1.272 from Aspergillus oryzae
morA / Q2U0N3: D-2-hydroxyacid dehydrogenase (NADP+) (EC 1.1.1.272) from Aspergillus oryzae

32% id,
79% cov

VIMSS206645: 3-oxoacyl-(acyl-carrier-protein) reductase
is similar to:
PaperBLAST

A0A0H2ZTN5: (+)-trans-carveol dehydrogenase (EC 1.1.1.275) from Mycobacterium avium

29% id,
96% cov

A0A0H2ZYS9: (+)-trans-carveol dehydrogenase (EC 1.1.1.275) from Mycobacterium avium

29% id,
93% cov

GAME25 / Q9LEG3: 3β-hydroxysteroid dehydrogenase/ Δ5,4 isomerase (EC 1.1.1.270) from Solanum lycopersicum

29% id,
93% cov

More...

DVU0554: NAD-dependent epimerase/dehydratase family protein
is similar to:
PaperBLAST

FCL1_ARATH / O49213: GDP-L-fucose synthase 1; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 1; AtFX; AtGER1; EC 1.1.1.271 from Arabidopsis thaliana
GER1 / O49213: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase (EC 1.1.1.271) from Arabidopsis thaliana
O49213: GDP-L-fucose synthase (EC 1.1.1.271) from Arabidopsis thaliana

27% id,
73% cov

FCL2_ARATH / Q9LMU0: Putative GDP-L-fucose synthase 2; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 2; AtGER2; EC 1.1.1.271 from Arabidopsis thaliana
Q9LMU0: GDP-L-fucose synthase (EC 1.1.1.271) from Arabidopsis thaliana

26% id,
72% cov

DVU2405: alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

39% id,
46% cov

DVU0342: NAD-dependent epimerase/dehydratase family protein
is similar to:
PaperBLAST

FCL1_ARATH / O49213: GDP-L-fucose synthase 1; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 1; AtFX; AtGER1; EC 1.1.1.271 from Arabidopsis thaliana
GER1 / O49213: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase (EC 1.1.1.271) from Arabidopsis thaliana
O49213: GDP-L-fucose synthase (EC 1.1.1.271) from Arabidopsis thaliana

23% id,
78% cov

FCL2_ARATH / Q9LMU0: Putative GDP-L-fucose synthase 2; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 2; AtGER2; EC 1.1.1.271 from Arabidopsis thaliana
Q9LMU0: GDP-L-fucose synthase (EC 1.1.1.271) from Arabidopsis thaliana

23% id,
43% cov

DVU3032: conserved hypothetical protein
is similar to:
PaperBLAST

lutC / O32259: component of an iron-sulfur oxidase for L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

35% id,
47% cov

Q5F884: L-lactate dehydrogenase (subunit 2/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

35% id,
45% cov

DVU2784: dehydrogenase, FMN-dependent family
is similar to:
PaperBLAST

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

39% id,
39% cov

DVU0082: conserved hypothetical protein
is similar to:
PaperBLAST

SDMB_METCA / Q60A54: Sterol demethylase protein B; 3beta-hydroxysteroid 3-dehydrogenase; 3beta-hydroxysteroid-4beta-carboxylate 3-dehydrogenase (decarboxylating); EC 1.1.1.270; EC 1.1.1.417 from Methylococcus capsulatus
sdmB / Q60A54: 3β-hydroxysteroid-4α-carboxylate 3-dehydrogenase (decarboxylating)/3β-hydroxysteroid 3-dehydrogenase (EC 1.1.1.270; EC 1.1.1.417) from Methylococcus capsulatus

27% id,
52% cov

DVU2885: alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

30% id,
47% cov

DVU2545: alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

36% id,
31% cov

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

31% id,
11% cov

DVU2201: alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

26% id,
43% cov

DVU0353: alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

27% id,
38% cov

DVU2396: alcohol dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

33% id,
31% cov

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

31% id,
12% cov

DVU2455: NAD-dependent epimerase/dehydratase family protein
is similar to:
PaperBLAST

FCL_AZOC5 / P33217: GDP-L-fucose synthase; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase; Nodulation protein NolK; EC 1.1.1.271 from Azorhizobium caulinodans

29% id,
35% cov

DVU2905: alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

27% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 23 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

115037-116281 (frame +2) on 1944
is similar to:
PaperBLAST

FCL2_ARATH / Q9LMU0: Putative GDP-L-fucose synthase 2; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase 2; AtGER2; EC 1.1.1.271 from Arabidopsis thaliana
Q9LMU0: GDP-L-fucose synthase (EC 1.1.1.271) from Arabidopsis thaliana
Also see hits to annotated proteins above

63% id,
98% cov

A0A143ZXB3: GDP-L-fucose synthase (EC 1.1.1.271) from Plasmodium falciparum
Also see hits to annotated proteins above

26% id,
97% cov

2295846-2297153 (frame +3) on 1944
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
Also see hits to annotated proteins above

24% id,
55% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory