Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 110 curated entries in PaperBLAST's database that match '1.1.1.9'.

These curated entries have 85 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU3159: glycerol-3-phosphate dehydrogenase (NAD(P)+)
is similar to:
PaperBLAST

GpsA / b3608: glycerol-3-phosphate dehydrogenase (EC 1.1.1.94) from Escherichia coli
gpsA / P0A6S7: glycerol-3-phosphate dehydrogenase (EC 1.1.1.94) from Escherichia coli
P0A6S7: glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) from Escherichia coli

45% id,
97% cov

GPDA_STRP6 / Q5XE03: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; EC 1.1.1.94 from Streptococcus pyogenes

43% id,
98% cov

GPDA_BACSU / P46919: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; NAD(P)H-dependent dihydroxyacetone-phosphate reductase; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; EC 1.1.1.94 from Bacillus subtilis

42% id,
96% cov

More...

DVU2985: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

EBL86_19295 / A0A3G6WGL6: L-tartrate dehydrogenase/D-malate dehydrogenase (decarboxylating)/meso-tartrate decarboxylase monomer (EC 1.1.1.83; EC 1.1.1.93) from Cereibacter sphaeroides

36% id,
99% cov

YeaU / b1800: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli
dmlA / P76251: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli

38% id,
95% cov

TTUC_PSEPU / Q51945: Tartrate dehydrogenase/decarboxylase; TDH; D-malate dehydrogenase [decarboxylating]; EC 1.1.1.93; EC 4.1.1.73; EC 1.1.1.83 from Pseudomonas putida
U05986.1 / Q51945: tartrate dehydrogenase subunit (EC 1.1.1.83; EC 1.1.1.93) from Pseudomonas putida

37% id,
98% cov

DVU3137: oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

C0IR58: aryl-alcohol dehydrogenase (NADP+) (EC 1.1.1.91) from Ralstonia sp.

36% id,
97% cov

DVU3132: glycerol-3-phosphate dehydrogenase, FAD-dependent
is similar to:
PaperBLAST

GUT2 / P32191: glycerol-3-phosphate dehydrogenase (EC 1.1.1.8; EC 1.1.1.94; EC 1.1.5.3) from Saccharomyces cerevisiae

36% id,
92% cov

VIMSS206645: 3-oxoacyl-(acyl-carrier-protein) reductase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

33% id,
97% cov

DVU0477: isocitrate dehydrogenase, NADP-dependent
is similar to:
PaperBLAST

EBL86_19295 / A0A3G6WGL6: L-tartrate dehydrogenase/D-malate dehydrogenase (decarboxylating)/meso-tartrate decarboxylase monomer (EC 1.1.1.83; EC 1.1.1.93) from Cereibacter sphaeroides

30% id,
94% cov

DVU0339: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

30% id,
95% cov

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

32% id,
89% cov

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli
C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

35% id,
71% cov

More...

DVU1412: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

28% id,
93% cov

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli
C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

32% id,
69% cov

Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa

31% id,
69% cov

More...

DVU2754: quinone oxidoreductase
is similar to:
PaperBLAST

DHSO_SHEEP / P07846: Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Ovis aries

25% id,
84% cov

M5AJW4: coniferyl-alcohol dehydrogenase (EC 1.1.1.194); aryl-alcohol dehydrogenase (EC 1.1.1.90) from Streptomyces sp.

29% id,
70% cov

DHSO_MOUSE / Q64442: Sorbitol dehydrogenase; SDH; SORD; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Mus musculus

24% id,
83% cov

More...

DVU3071: oxidoreductase, FAD/iron-sulfur cluster-binding domain protein
is similar to:
PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

35% id,
37% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

34% id,
38% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

36% id,
20% cov

More...

DVU1940: anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative
is similar to:
PaperBLAST

GUT2 / P32191: glycerol-3-phosphate dehydrogenase (EC 1.1.1.8; EC 1.1.1.94; EC 1.1.5.3) from Saccharomyces cerevisiae

32% id,
30% cov

GUT2 / P32191: glycerol-3-phosphate dehydrogenase (EC 1.1.1.8; EC 1.1.1.94; EC 1.1.5.3) from Saccharomyces cerevisiae

46% id,
8% cov

DVU0827: glycolate oxidase, subunit GlcD, putative
is similar to:
PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

28% id,
17% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

28% id,
17% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

31% id,
13% cov

DVU0390: glycolate oxidase, subunit GlcD, putative
is similar to:
PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

30% id,
14% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

34% id,
12% cov

DVU3027: glycolate oxidase, subunit GlcD
is similar to:
PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

30% id,
14% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

27% id,
14% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

27% id,
11% cov

More...

DVU0849: Quinone-interacting membrane-bound oxidoreductase
is similar to:
PaperBLAST

GUT2 / P32191: glycerol-3-phosphate dehydrogenase (EC 1.1.1.8; EC 1.1.1.94; EC 1.1.5.3) from Saccharomyces cerevisiae

42% id,
8% cov

DVU2673: anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation
is similar to:
PaperBLAST

GUT2 / P32191: glycerol-3-phosphate dehydrogenase (EC 1.1.1.8; EC 1.1.1.94; EC 1.1.5.3) from Saccharomyces cerevisiae

42% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 16 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory