Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 42 curated entries in PaperBLAST's database that match '1.1.1.95'.

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0339: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:		 PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 30% id,
95% cov

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 32% id,
89% cov

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli
C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

 35% id,
71% cov

More...

DVU1412: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:		 PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 28% id,
93% cov

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli
C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

 32% id,
69% cov

Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa

 31% id,
69% cov

More...

DVU3071: oxidoreductase, FAD/iron-sulfur cluster-binding domain protein
is similar to:		 PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 35% id,
37% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 34% id,
38% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 36% id,
20% cov

More...

DVU0827: glycolate oxidase, subunit GlcD, putative
is similar to:		 PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 28% id,
17% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 28% id,
17% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 31% id,
13% cov

DVU0390: glycolate oxidase, subunit GlcD, putative
is similar to:		 PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 30% id,
14% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 34% id,
12% cov

DVU3027: glycolate oxidase, subunit GlcD
is similar to:		 PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 30% id,
14% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 27% id,
14% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 27% id,
11% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory