Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3'.

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU3033: iron-sulfur cluster-binding protein
is similar to:
PaperBLAST

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

100% id,
100% cov

lldG / Q8EGS5: L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC 1.1.2.3) from Shewanella oneidensis

36% id,
90% cov

lldE / Q8EGS4: L-lactate dehydrogenase LldE subunit (EC 1.1.2.3) from Shewanella oneidensis

28% id,
98% cov

DVU3032: conserved hypothetical protein
is similar to:
PaperBLAST

DVU_3032 / Q726S4: quinone-dependent L-lactate dehydrogenase small subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

100% id,
100% cov

lldF / Q8EGS6: L-lactate dehydrogenase LldF subunit (EC 1.1.2.3) from Shewanella oneidensis

36% id,
53% cov

DVU1782: iron-sulfur cluster-binding protein
is similar to:
PaperBLAST

lldG / Q8EGS5: L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC 1.1.2.3) from Shewanella oneidensis

43% id,
80% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

37% id,
66% cov

DVU_3032 / Q726S4: quinone-dependent L-lactate dehydrogenase small subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

27% id,
57% cov

DVU1783: cysteine-rich domain protein
is similar to:
PaperBLAST

lldE / Q8EGS4: L-lactate dehydrogenase LldE subunit (EC 1.1.2.3) from Shewanella oneidensis

33% id,
98% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

35% id,
34% cov

DVU1781: conserved hypothetical protein
is similar to:
PaperBLAST

lldF / Q8EGS6: L-lactate dehydrogenase LldF subunit (EC 1.1.2.3) from Shewanella oneidensis

35% id,
90% cov

DVU_3032 / Q726S4: quinone-dependent L-lactate dehydrogenase small subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

38% id,
68% cov

DVU3028: iron-sulfur cluster-binding protein
is similar to:
PaperBLAST

lldE / Q8EGS4: L-lactate dehydrogenase LldE subunit (EC 1.1.2.3) from Shewanella oneidensis

27% id,
100% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

30% id,
57% cov

DVU2784: dehydrogenase, FMN-dependent family
is similar to:
PaperBLAST

PS417_19130: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas simiae

48% id,
34% cov

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

47% id,
34% cov

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

48% id,
32% cov

More...

DVU1823: glutamate synthase, iron-sulfur cluster-binding subunit, putative
is similar to:
PaperBLAST

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

37% id,
22% cov

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

36% id,
21% cov

SM_b20850: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Sinorhizobium meliloti

32% id,
20% cov

More...

DVU1044: inosine-5`-monophosphate dehydrogenase
is similar to:
PaperBLAST

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

27% id,
28% cov

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

28% id,
25% cov

CYB2_TALSN / B8MKR3: L-lactate dehydrogenase (cytochrome); EC 1.1.2.3 from Talaromyces stipitatus

46% id,
10% cov

DVU2471: oxidoreductase, selenocysteine-containing
is similar to:
PaperBLAST

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

32% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory